Semmelweis Publications
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    • Bioinformatika Tanszék - Publications (article, review) indexed in international databases (2020-2025)

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    Number of publications: 195
    1.
    Transcriptome-level discovery of survival-associated biomarkers and therapy targets in non-small-cell lung cancer
    Gyorffy, B
    D1
    BRITISH JOURNAL OF PHARMACOLOGY
    2024.
    DOI:10.1111/bph.16257 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    2.
    Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
    Lánczky, A;Gyorffy, B
    D1
    JOURNAL OF MEDICAL INTERNET RESEARCH
    2021.
    DOI:10.2196/27633 (Copy DOI)
    Semmelweis University authors: Lánczky, András, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    3.
    Discovery and ranking of the most robust prognostic biomarkers in serous ovarian cancer
    Gyorffy, B
    D1
    GEROSCIENCE
    2023.
    DOI:10.1007/s11357-023-00742-4 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    4.
    Integrated analysis of public datasets for the discovery and validation of survival-associated genes in solid tumors
    Gyorffy, B
    D1
    INNOVATION
    2024.
    DOI:10.1016/j.xinn.2024.100625 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    5.
    TNMplot.com: A Web Tool for the Comparison of Gene Expression in Normal, Tumor and Metastatic Tissues
    Bartha, A;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2021.
    DOI:10.3390/ijms22052622 (Copy DOI)
    6.
    Survival analysis across the entire transcriptome identifies biomarkers with the highest prognostic power in breast cancer
    Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2021.
    DOI:10.1016/j.csbj.2021.07.014 (Copy DOI)
    7.
    Pancancer survival analysis of cancer hallmark genes
    Nagy, A;Munkácsy, G;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2021.
    DOI:10.1038/s41598-021-84787-5 (Copy DOI)
    Semmelweis University authors: Nagy, Ádám, Munkácsy, Gyöngyi, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    8.
    Autophagy and cancer drug resistance in dialogue: Pre-clinical and clinical evidence
    Qin, Y;Ashrafizadeh, M;Mongiardini, V;Grimaldi, B;Crea, F;Rietdorf, K;Gyorffy, B;Klionsky, DJ;Ren, J;Zhang, W;Zhang, XB
    D1
    CANCER LETTERS
    2023.
    DOI:10.1016/j.canlet.2023.216307 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    9.
    Transient loss of Polycomb components induces an epigenetic cancer fate
    Parreno, V;Loubiere, V;Schuettengruber, B;Fritsch, L;Rawal, CC;Erokhin, M;Gyorffy, B;Normanno, D;Di Stefano, M;Moreaux, J;Butova, NL;Chiolo, I;Chetverina, D;Martinez, AM;Cavalli, G
    D1
    NATURE
    2024.
    DOI:10.1038/s41586-024-07328-w (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    10.
    DisProt in 2024: improving function annotation of intrinsically disordered proteins
    Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Quaglia, Federica; Bouharoua, Adel; Tosatto, Silvio C. E.; Piovesan, Damiano; , ; Vasileios, Sagris; Vasilis, J Promponas; Anastasia, Chasapi; Erzsébet, Fichó; Galo, E Balatti; Gustavo, Parisi; Martín, González Buitrón; Gabor, Erdos; Matyas, Pajkos; Zsuzsanna, Dosztányi; Laszlo, Dobson; Alessio, Del Conte; Damiano, Clementel; Edoardo, Salladini; Emanuela, Leonardi; Fatemeh, Kordevani; Hamidreza, Ghafouri; Luiggi, G Tenorio Ku; Alexander, ...
    D1
    NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962
    2024.
    DOI:10.1093/nar/gkad928 (Copy DOI)
    Semmelweis University authors: Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    11.
    The evolution of lung cancer and impact of subclonal selection in TRACERx
    Frankell, AM;Dietzen, M;Al Bakir, M;Lim, EL;Karasaki, T;Ward, S;Veeriah, S;Colliver, E;Huebner, A;Bunkum, A;Hill, MS;Grigoriadis, K;Moore, DA;Black, JRM;Liu, WK;Thol, K;Pich, O;Watkins, TBK;Naceur-Lombardelli, C;Cook, DE;Salgado, R;Wilson, GA;Bailey, C;Angelova, M;Bentham, R;Martínez-Ruiz, C;Abbosh, C;Nicholson, AG;Le Quesne, J;Biswas, D;Rosenthal, R;Puttick, C;Hessey, S;Lee, C;Prymas, P;Toncheva, A;Smith, J;Xing, W;Nicod, J;Price, G;Kerr, KM;Naidu, B;Middleton, G;Blyth, KG;Fennell, DA;Forster,...
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-05783-5 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    12.
    Predictive biomarkers of immunotherapy response with pharmacological applications in solid tumors
    Kovács, SA;Fekete, JT;Gyorffy, B
    D1
    ACTA PHARMACOLOGICA SINICA
    2023.
    DOI:10.1038/s41401-023-01079-6 (Copy DOI)
    13.
    Spatial predictors of immunotherapy response in triple-negative breast cancer
    Wang, XQ;Danenberg, E;Huang, CS;Egle, D;Callari, M;Bermejo, B;Dugo, M;Zamagni, C;Thill, M;Anton, A;Zambelli, S;Russo, S;Ciruelos, EM;Greil, R;Györffy, B;Semiglazov, V;Colleoni, M;Kelly, CM;Mariani, G;Del Mastro, L;Biasi, O;Seitz, RS;Valagussa, P;Viale, G;Gianni, L;Bianchini, G;Ali, HR
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-06498-3 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    14.
    ELM-the Eukaryotic Linear Motif resource-2024 update
    Kumar, M;Michael, S;Alvarado-Valverde, J;Zeke, A;Lazar, T;Glavina, J;Nagy-Kanta, E;Mac Donagh, J;Kalman, ZE;Pascarelli, S;Palopoli, N;Dobson, L;Suarez, CF;Van Roey, K;Krystkowiak, I;Griffin, JE;Nagpal, A;Bhardwaj, R;Diella, F;Mészáros, B;Dean, K;Davey, NE;Pancsa, R;Chemes, LB;Gibson, TJ
    D1
    NUCLEIC ACIDS RESEARCH
    2024.
    DOI:10.1093/nar/gkad1058 (Copy DOI)
    Semmelweis University authors: Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    15.
    The evolution of non-small cell lung cancer metastases in TRACERx
    Al Bakir, M;Huebner, A;Martínez-Ruiz, C;Grigoriadis, K;Watkins, TBK;Pich, O;Moore, DA;Veeriah, S;Ward, S;Laycock, J;Johnson, D;Rowan, A;Razaq, M;Akther, M;Naceur-Lombardelli, C;Prymas, P;Toncheva, A;Hessey, S;Dietzen, M;Colliver, E;Frankell, AM;Bunkum, A;Lim, EL;Karasaki, T;Abbosh, C;Hiley, CT;Hill, MS;Cook, DE;Wilson, GA;Salgado, R;Nye, E;Stone, RK;Fennell, DA;Price, G;Kerr, KM;Naidu, B;Middleton, G;Summers, Y;Lindsay, CR;Blackhall, FH;Cave, J;Blyth, KG;Nair, A;Ahmed, A;Taylor, MN;Procter, AJ;...
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-05729-x (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    16.
    Microenvironmental ammonia enhances T cell exhaustion in colorectal cancer
    Bell, HN;Huber, AK;Singhal, R;Korimerla, N;Rebernick, RJ;Kumar, R;El-derany, MO;Sajjakulnukit, P;Das, NK;Kerk, SA;Solanki, S;James, JG;Kim, D;Zhang, L;Chen, BD;Mehra, R;Frankel, TL;Gyorffy, B;Fearon, ER;di Magliano, MP;Gonzalez, FJ;Banerjee, R;Wahl, DR;Lyssiotis, CA;Green, M;Shah, YM
    D1
    CELL METABOLISM
    2023.
    DOI:10.1016/j.cmet.2022.11.013 (Copy DOI)
    17.
    Different mutations in SARS-CoV-2 associate with severe and mild outcome
    Nagy, A;Pongor, S;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
    2021.
    DOI:10.1016/j.ijantimicag.2020.106272 (Copy DOI)
    Semmelweis University authors: Nagy, Ádám, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    18.
    Prognostic significance of a signature based on senescence-related genes in colorectal cancer
    Ungvari, Z;Ungvari, A;Bianchini, G;Gyorffy, B
    D1
    GEROSCIENCE
    2024.
    DOI:10.1007/s11357-024-01164-6 (Copy DOI)
    19.
    Mediator kinase inhibition reverses castration resistance of advanced cancer
    Li, J;Hilimire, TA;Liu, YY;Wang, LL;Liang, JX;Gyorffy, B;Sikirzhytski, V;Ji, H;Zhang, L;Cheng, C;Ding, XK;Kerr, KR;Dowling, CE;Chumanevich, AA;Mack, ZT;Schools, GP;Lim, CU;Ellis, L;Zi, XL;Porter, DC;Broude, EV;McInnes, C;Wilding, G;Lilly, MB;Roninson, IB;Chen, MQ
    D1
    JOURNAL OF CLINICAL INVESTIGATION
    2024.
    DOI:10.1172/JCI176709 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    20.
    Long-term Multimodal Recording Reveals Epigenetic Adaptation Routes in Dormant Breast Cancer Cells
    Rosano, D;Sofyali, E;Dhiman, H;Ghirardi, C;Ivanoiu, D;Heide, T;Vingiani, A;Bertolotti, A;Pruneri, G;Canale, E;Dewhurst, HF;Saha, D;Slaven, N;Barozzi, I;Li, T;Zemlyanskiy, G;Phillips, H;James, C;Gyorffy, B;Lynn, C;Cresswell, GD;Rehman, F;Noberini, R;Bonaldi, T;Sottoriva, A;Magnani, L
    D1
    CANCER DISCOVERY
    2024.
    DOI:10.1158/2159-8290.CD-23-1161 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    21.
    The artificial intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma.
    Pan, Xiaoxi; AbdulJabbar, Khalid; Coelho-Lima, Jose; Grapa, Anca-Ioana; Zhang, Hanyun; Cheung, Alvin Ho Kwan; Baena, Juvenal; Karasaki, Takahiro; Wilson, Claire Rachel; Sereno, Marco; Veeriah, Selvaraju; Aitken, Sarah J; Hackshaw, Allan; Nicholson, Andrew G; Jamal-Hanjani, Mariam; Swanton, Charles; , ; Yuan, Yinyin; Le Quesne, John; Moore, David A; Le Quesne, John; Janes, Sam M; Hacker, Anne-Marie; Sharp, Abigail; Smith, Sean; Dhanda, Harjot Kaur; Chan, Kitty; Pilotti, Camilla; Leslie, Rachel; C...
    D1
    NATURE CANCER 2662-1347
    2024.
    DOI:10.1038/s43018-023-00694-w (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    22.
    Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis
    Menyhárt, O;Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2021.
    DOI:10.1016/j.csbj.2021.01.009 (Copy DOI)
    23.
    The Immune-Related 27-Gene Signature DetermaIO Predicts Response to Neoadjuvant Atezolizumab plus Chemotherapy in Triple-Negative Breast Cancer
    Dugo, M;Huang, CS;Egle, D;Bermejo, B;Zamagni, C;Seitz, RS;Nielsen, TJ;Thill, M;Antón-Torres, A;Russo, S;Ciruelos, EM;Schweitzer, BL;Ross, DT;Galbardi, B;Greil, R;Semiglazov, V;Gyorffy, B;Colleoni, M;Kelly, CM;Mariani, G;Del Mastro, L;Blasi, O;Callari, M;Pusztai, L;Valagussa, P;Viale, G;Gianni, L;Bianchini, G
    D1
    CLINICAL CANCER RESEARCH
    2024.
    DOI:10.1158/1078-0432.CCR-24-0149 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    24.
    Analysis of a large cohort of pancreatic cancer transcriptomic profiles to reveal the strongest prognostic factors
    Posta, M;Gyorffy, B
    D1
    CTS-CLINICAL AND TRANSLATIONAL SCIENCE
    2023.
    DOI:10.1111/cts.13563 (Copy DOI)
    25.
    ALK peptide vaccination restores the immunogenicity of ALK-rearranged non-small cell lung cancer
    Mota, I;Patrucco, E;Mastini, C;Mahadevan, NR;Thai, TC;Bergaggio, E;Cheong, TC;Leonardi, G;Karaca-Atabay, E;Campisi, M;Poggio, T;Menotti, M;Ambrogio, C;Longo, DL;Klaeger, S;Keshishian, H;Sztupinszki, ZM;Szallasi, Z;Keskin, DB;Duke-Cohan, JS;Reinhold, B;Carr, SA;Wu, CJ;Moynihan, KD;Irvine, DJ;Barbie, DA;Reinherz, EL;Voena, C;Awad, MM;Blasco, RB;Chiarle, R
    D1
    NATURE CANCER
    2023.
    DOI:10.1038/s43018-023-00591-2 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    26.
    DNA methylation-based diagnostic, prognostic, and predictive biomarkers in colorectal cancer
    Müller, D;Gyorffy, B
    D1
    BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
    2022.
    DOI:10.1016/j.bbcan.2022.188722 (Copy DOI)
    Semmelweis University authors: Müller, Dalma, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    27.
    Predictive biomarkers of platinum and taxane resistance using the transcriptomic data of 1816 ovarian cancer patients
    Fekete, JT;Osz, A;Pete, I;Nagy, GR;Vereczkey, I;Gyorffy, B
    D1
    GYNECOLOGIC ONCOLOGY
    2020.
    DOI:10.1016/j.ygyno.2020.01.006 (Copy DOI)
    28.
    muTarget: A platform linking gene expression changes and mutation status in solid tumors
    Nagy, A;Gyorffy, B
    Q1
    INTERNATIONAL JOURNAL OF CANCER
    2021.
    DOI:10.1002/ijc.33283 (Copy DOI)
    29.
    Liquid biopsy epigenomic profiling for cancer subtyping
    Baca, SC;Seo, JH;Davidsohn, MP;Fortunato, B;Semaan, K;Sotudian, S;Lakshminarayanan, G;Diossy, M;Qiu, XT;El Zarif, T;Savignano, H;Canniff, J;Madueke, I;Saliby, RM;Zhang, ZW;Li, R;Jiang, YJ;Taing, L;Awad, M;Chau, CH;Decaprio, JA;Figg, WD;Greten, TF;Hata, AN;Hodi, FS;Hughes, ME;Ligon, KL;Lin, NY;Ng, K;Oser, MG;Meador, C;Parsons, HA;Pomerantz, MM;Rajan, A;Ritz, J;Thakuria, M;Tolaney, SM;Wen, PY;Long, HY;Berchuck, JE;Szallasi, Z;Choueiri, TK;Freedman, ML
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02605-z (Copy DOI)
    30.
    MultipleTesting.com: A tool for life science researchers for multiple hypothesis testing correction
    Menyhart, O;Weltz, B;Gyorffy, B
    Q1
    PLOS ONE
    2021.
    DOI:10.1371/journal.pone.0245824 (Copy DOI)
    31.
    Modulation of the Estrogen/erbB2 Receptors Cross-talk by CDK4/6 Inhibition Triggers Sustained Senescence in Estrogen Receptor- and ErbB2-positive Breast Cancer
    Viganò, L;Locatelli, A;Ulisse, A;Galbardi, B;Dugo, M;Tosi, D;Tacchetti, C;Daniele, T;Gyorffy, B;Sica, L;Macchini, M;Zambetti, M;Zambelli, S;Bianchini, G;Gianni, L
    D1
    CLINICAL CANCER RESEARCH
    2022.
    DOI:10.1158/1078-0432.CCR-21-3185 (Copy DOI)
    32.
    Research funding: past performance is a stronger predictor of future scientific output than reviewer scores
    Gyorffy, B;Herman, P;Szabó, I
    D1
    JOURNAL OF INFORMETRICS
    2020.
    DOI:10.1016/j.joi.2020.101050 (Copy DOI)
    33.
    GTP Signaling Links Metabolism, DNA Repair, and Responses to Genotoxic Stress
    Zhou, W.; Zhao, Z.; Lin, A.; Yang, J.Z.; Xu, J.; Wilder-Romans, K.; Yang, A.; Li, J.; Solanki, S.; Speth, J.M.; Walker, N.; Scott, A.J.; Wang, L.; Wen, B.; Andren, A.; Zhang, L.; Kothari, A.U.; Yao, Y.; Peterson, E.R.; Korimerla, N.; Werner, C.K.; Ullrich, A.; Liang, J.; Jacobson, J.; Palavalasa, S.; O'Brien, A.M.; Elaimy, A.L.; Ferris, S.P.; Zhao, S.G.; Sarkaria, J.N.; Győrffy, B.; Zhang, S.; Al-Holou, W.N.; Umemura, Y.; Morgan, M.A.; Lawrence, T.S.; Lyssiotis, C.A.; Peters-Golden, M.; Shah, Y...
    D1
    CANCER DISCOVERY 2159-8274 2159-8290
    2024.
    DOI:10.1158/2159-8290.CD-23-0437 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    34.
    Oncogene-mediated metabolic gene signature predicts breast cancer outcome
    Aslan, M;Hsu, EC;Garcia-Marques, FJ;Bermudez, A;Liu, SQ;Shen, M;West, M;Zhang, CA;Rice, MA;Brooks, JD;West, R;Pitteri, SJ;Gyorffy, B;Stoyanova, T
    D1
    NPJ BREAST CANCER
    2021.
    DOI:10.1038/s41523-021-00341-6 (Copy DOI)
    35.
    UniTmp: unified resources for transmembrane proteins
    Dobson, L;Gerdán, C;Tusnády, S;Szekeres, L;Kuffa, K;Langó, T;Zeke, A;Tusnády, GE
    D1
    NUCLEIC ACIDS RESEARCH
    2024.
    DOI:10.1093/nar/gkad897 (Copy DOI)
    Semmelweis University authors: Dobson, László, Tusnády, Gábor,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    36.
    MHC Hammer reveals genetic and non-genetic HLA disruption in cancer evolution.
    Puttick, Clare; Jones, Thomas P; Leung, Michelle M; Galvez-Cancino, Felipe; Liu, Jiali; Varas-Godoy, Manuel; Rowan, Andrew; Pich, Oriol; Martinez-Ruiz, Carlos; Bentham, Robert; Dijkstra, Krijn K; Black, James R M; Rosenthal, Rachel; Kanu, Nnennaya; Litchfield, Kevin; Salgado, Roberto; Moore, David A; Van Loo, Peter; Jamal-Hanjani, Mariam; Quezada, Sergio A; , ; Swanton, Charles; McGranahan, Nicholas; Cheyne, Heather; Khalil, Mohammed; Richardson, Shirley; Cruickshank, Tracey; Lim, Eric; Aerts, H...
    D1
    NATURE GENETICS 1061-4036 1546-1718
    2024.
    DOI:10.1038/s41588-024-01883-8 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    37.
    Inflammation and Colorectal Cancer: A Meta-Analysis of the Prognostic Significance of the Systemic Immune-Inflammation Index (SII) and the Systemic Inflammation Response Index (SIRI)
    Menyhart, O;Fekete, JT;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms25158441 (Copy DOI)
    38.
    The cell cycle-related genes RHAMM, AURKA, TPX2, PLK1, and PLK4 are associated with the poor prognosis of breast cancer patients
    Kahl, I;Mense, J;Finke, C;Boller, AL;Lorber, C;Gyorffy, B;Greve, B;Götte, M;Espinoza-Sánchez, NA
    Q2
    JOURNAL OF CELLULAR BIOCHEMISTRY
    2022.
    DOI:10.1002/jcb.30205 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    39.
    The m6A writer RBM15 drives the growth of triple-negative breast cancer cells through the stimulation of serine and glycine metabolism
    Park, SH;Ju, JS;Woo, H;Yun, HJ;Lee, SB;Kim, SH;Gyorffy, B;Kim, EJ;Kim, H;Han, HD;Eyun, SI;Lee, JH;Park, YY
    D1
    EXPERIMENTAL AND MOLECULAR MEDICINE
    2024.
    DOI:10.1038/s12276-024-01235-w (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    40.
    BRD4 regulates key transcription factors that drive epithelial-mesenchymal transition in castration-resistant prostate cancer
    Shafran, JS;Jafari, N;Casey, AN;Gyorffy, B;Denis, G
    D1
    PROSTATE CANCER AND PROSTATIC DISEASES
    2021.
    DOI:10.1038/s41391-020-0246-y (Copy DOI)
    41.
    Survival analysis in breast cancer using proteomic data from four independent datasets
    Osz, A;Lánczky, A;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2021.
    DOI:10.1038/s41598-021-96340-5 (Copy DOI)
    42.
    Contingent parental responses are naturally associated with zebra finch song learning
    Carouso-Peck, S;Menyhart, O;DeVoogd, TJ;Goldstein, MH
    D1
    ANIMAL BEHAVIOUR
    2020.
    DOI:10.1016/j.anbehav.2020.04.019 (Copy DOI)
    43.
    Glucocorticoid receptor triggers a reversible drug-tolerant dormancy state with acquired therapeutic vulnerabilities in lung cancer
    Prekovic, S;Schuurman, K;Mayayo-Peralta, I;Manjón, AG;Buijs, M;Yavuz, S;Wellenstein, MD;Barrera, A;Monkhorst, K;Huber, A;Morris, B;Lieftink, C;Chalkiadakis, T;Alkan, F;Silva, J;Gyorffy, B;Hoekman, L;van den Broek, B;Teunissen, H;Debets, DO;Severson, T;Jonkers, J;Reddy, T;de Visser, KE;Faller, W;Beijersbergen, R;Altelaar, M;de Wit, E;Medema, R;Zwart, W
    D1
    NATURE COMMUNICATIONS
    2021.
    DOI:10.1038/s41467-021-24537-3 (Copy DOI)
    44.
    Relationship between bibliometric indicators and university ranking positions
    Szluka, P;Csajbok, E;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2023.
    DOI:10.1038/s41598-023-35306-1 (Copy DOI)
    45.
    Pan-cancer analysis of antibody-drug conjugate targets and putative predictors of treatment response
    Bosi, C;Bartha, A;Galbardi, B;Notini, G;Naldini, MM;Licata, L;Viale, G;Mariani, M;Pistilli, B;Ali, HR;Andre, F;Piras, M;Callari, M;Barreca, M;Locatelli, A;Vigano, L;Criscitiello, C;Pusztai, L;Curigliano, G;Gyorffy, B;Dugo, M;Bianchini, G
    Q1
    EUROPEAN JOURNAL OF CANCER
    2023.
    DOI:10.1016/j.ejca.2023.113379 (Copy DOI)
    Semmelweis University authors: Bartha, Áron, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    46.
    Evaluation of apoptosis stimulating protein of TP53-1 (ASPP1/PPP1R13B) to predict therapy resistance and overall survival in acute myeloid leukemia (AML)
    Schittenhelm, MM;Kaiser, M;Gyorffy, B;Kampa-Schittenhelm, KM
    D1
    CELL DEATH & DISEASE
    2024.
    DOI:10.1038/s41419-023-06372-0 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    47.
    Type I Interferon Regulates a Coordinated Gene Network to Enhance Cytotoxic T Cell-Mediated Tumor Killing
    Fan, JB;Miyauchi, S;Xu, HZ;Liu, D;Kim, LJY;Burkart, C;Cheng, H;Arimoto, K;Yan, M;Zhou, Y;Gyorffy, B;Knobeloch, KP;Rich, JN;Cang, H;Fu, XD;Zhang, DE
    D1
    CANCER DISCOVERY
    2020.
    DOI:10.1158/2159-8290.CD-19-0608 (Copy DOI)
    48.
    Harnessing Hyperthermia: Molecular, Cellular, and Immunological Insights for Enhanced Anticancer Therapies
    Lukácsi, S;Munkácsy, G;Gyorffy, B
    Q1
    INTEGRATIVE CANCER THERAPIES
    2024.
    DOI:10.1177/15347354241242094 (Copy DOI)
    Semmelweis University authors: Munkácsy, Gyöngyi, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    49.
    Artificial intelligence methods available for cancer research
    Murmu, A;Gyorffy, B
    Q1
    FRONTIERS OF MEDICINE
    2024.
    DOI:10.1007/s11684-024-1085-3 (Copy DOI)
    Semmelweis University authors: Murmu, Ankita, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    50.
    Genome engineering for estrogen receptor mutations reveals differential responses to anti-estrogens and new prognostic gene signatures for breast cancer
    Harrod, A;Lai, CF;Goldsbrough, I;Simmons, GM;Oppermans, N;Santos, DB;Gyorffy, B;Allsopp, RC;Toghill, BJ;Balachandran, K;Lawson, M;Morrow, CJ;Surakala, M;Carnevalli, LS;Zhang, P;Guttery, DS;Shaw, JA;Coombes, RC;Buluwela, L;Ali, S
    D1
    ONCOGENE
    2022.
    DOI:10.1038/s41388-022-02483-8 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    51.
    Predictive value of molecular subtypes and APOBEC3G for adjuvant chemotherapy in urothelial bladder cancer
    Olah, C;Reis, H;Hoffmann, MJ;Mairinger, F;Ting, S;Hadaschik, B;Krafft, U;Grünwald, V;Nyirady, P;Varadi, M;Gyorffy, B;Kiss, A;Szekely, E;Sjödahl, G;Szarvas, T
    Q1
    CANCER MEDICINE
    2023.
    DOI:10.1002/cam4.5324 (Copy DOI)
    52.
    Inhibition of CDK8/19 Mediator kinase potentiates HER2-targeting drugs and bypasses resistance to these agents in vitro and in vivo
    Ding, XK;Sharko, AC;McDermott, MSJ;Schools, GP;Chumanevich, A;Ji, H;Li, J;Zhang, L;Mack, ZT;Sikirzhytski, V;Shtutman, M;Ivers, L;O'Donovan, N;Crown, J;Gyorffy, B;Chen, MQ;Roninson, IB;Broude, E
    D1
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OFAMERICA
    2022.
    DOI:10.1073/pnas.2201073119 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    53.
    Hyperleptinemia in obese state renders luminal breast cancers refractory to tamoxifen by coordinating a crosstalk between Med1, miR205 and ErbB
    Nagalingam, A;Siddharth, S;Parida, S;Muniraj, N;Avtanski, D;Kuppusamy, P;Elsey, J;Arbiser, JL;Gyorffy, B;Sharma, D
    D1
    NPJ BREAST CANCER
    2021.
    DOI:10.1038/s41523-021-00314-9 (Copy DOI)
    54.
    Down-regulation of A20 promotes immune escape of lung adenocarcinomas
    Breitenecker, K;Homolya, M;Luca, AC;Lang, V;Trenk, C;Petroczi, G;Mohrherr, J;Horvath, J;Moritsch, S;Haas, L;Kurnaeva, M;Eferl, R;Stoiber, D;Moriggl, R;Bilban, M;Obenauf, AC;Ferran, C;Dome, B;Laszlo, V;Gyorffy, B;Dezso, K;Moldvay, J;Casanova, E;Moll, HP
    D1
    SCIENCE TRANSLATIONAL MEDICINE
    2021.
    DOI:10.1126/scitranslmed.abc3911 (Copy DOI)
    55.
    Is there a golden age in publication activity?-an analysis of age-related scholarly performance across all scientific disciplines
    Gyorffy, B;Csuka, G;Herman, P;Török, A
    D1
    SCIENTOMETRICS
    2020.
    DOI:10.1007/s11192-020-03501-w (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    56.
    Clinical sequencing identifies potential actionable alterations in a high rate of urachal and primary bladder adenocarcinomas
    Varadi, M;Nagy, N;Reis, H;Hadaschik, B;Niedworok, C;Modos, O;Szendroi, A;Ablat, J;Black, PC;Keresztes, D;Csizmarik, A;Olah, C;Gaisa, NT;Kiss, A;Timar, J;Toth, E;Csernak, E;Gerstner, A;Mittal, V;Karkampouna, S;de Julio, MK;Gyorffy, B;Bedics, G;Rink, M;Fisch, M;Nyirady, P;Szarvas, T
    Q1
    CANCER MEDICINE
    2023.
    DOI:10.1002/cam4.5639 (Copy DOI)
    57.
    Transcriptomic datasets of cancer patients treated with immune-checkpoint inhibitors: a systematic review
    Kovács, SA;Gyorffy, B
    D1
    JOURNAL OF TRANSLATIONAL MEDICINE
    2022.
    DOI:10.1186/s12967-022-03409-4 (Copy DOI)
    Semmelweis University authors: Kovács, Szonja Anna, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    58.
    Evidence for Enhanced Exosome Production in Aromatase Inhibitor-Resistant Breast Cancer Cells
    Augimeri, G;La Camera, G;Gelsomino, L;Giordano, C;Panza, S;Sisci, D;Morelli, C;Gyorffy, B;Bonofiglio, D;Andò, S;Barone, I;Catalano, S
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2020.
    DOI:10.3390/ijms21165841 (Copy DOI)
    59.
    A novel function of STAT3β in suppressing interferon response improves outcome in acute myeloid leukemia
    Edtmayer, S;Witalisz-Siepracka, A;Zdársky, B;Heindl, K;Weiss, S;Eder, T;Dutta, S;Graichen, U;Klee, S;Sharif, O;Wieser, R;Gyorffy, B;Poli, V;Casanova, E;Sill, H;Grebien, F;Stoiber, D
    D1
    CELL DEATH & DISEASE
    2024.
    DOI:10.1038/s41419-024-06749-9 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    60.
    A Functional Survey of the Regulatory Landscape of Estrogen Receptor-Positive Breast Cancer Evolution
    Barozzi, I;Slaven, N;Canale, E;Lopes, R;Barbosa, IAM;Bleu, M;Ivanoiu, D;Pacini, C;Mensa, E;Chambers, A;Bravaccini, S;Ravaioli, S;Gyorffy, B;Dieci, MV;Pruneri, G;Galli, GG;Magnani, L
    D1
    CANCER DISCOVERY
    2024.
    DOI:10.1158/2159-8290.CD-23-1157 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    61.
    Genomic Mapping Identifies Mutations in RYR2 and AHNAK as Associated with Favorable Outcome in Basal-Like Breast Tumors Expressing PD1/PD-L1
    Cimas, FJ;Manzano, A;Baliu-Piqué, M;García-Gil, E;Pérez-Segura, P;Nagy, A;Pandiella, A;Gyorffy, B;Ocana, A
    Q1
    CANCERS
    2020.
    DOI:10.3390/cancers12082243 (Copy DOI)
    62.
    The EMT factor ZEB1 paradoxically inhibits EMT in BRAF-mutant carcinomas
    Sánchez-Tilló, E;Pedrosa, L;Vila, I;Chen, YX;Györffy, B;Sánchez-Moral, L;Siles, L;Lozano, JJ;Esteve-Codina, A;Darling, DS;Cuatrecasas, M;Castells, A;Maurel, J;Postigo, A
    D1
    JCI INSIGHT
    2023.
    DOI:10.1172/jci.insight.164629 (Copy DOI)
    63.
    Dietary approaches for exploiting metabolic vulnerabilities in cancer
    Menyhárt, O;Gyorffy, B
    D1
    BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
    2024.
    DOI:10.1016/j.bbcan.2023.189062 (Copy DOI)
    Semmelweis University authors: Menyhart, Otilia, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    64.
    Luminal breast cancer identity is determined by loss of glucocorticoid receptor activity
    Prekovic, S;Chalkiadakis, T;Roest, M;Roden, D;Lutz, C;Schuurman, K;Opdam, M;Hoekman, L;Abbott, N;Tesselaar, T;Wajahat, M;Dwyer, AR;Mayayo-Peralta, I;Gomez, G;Altelaar, M;Beijersbergen, R;Gyorffy, B;Young, L;Linn, S;Jonkers, J;Tilley, W;Hickey, T;Vareslija, D;Swarbrick, A;Zwart, W
    D1
    EMBO MOLECULAR MEDICINE
    2023.
    DOI:10.15252/emmm.202317737 (Copy DOI)
    65.
    Gene expression-based biomarkers designating glioblastomas resistant to multiple treatment strategies
    Menyhárt, O;Fekete, JT;Gyorffy, B
    Q1
    CARCINOGENESIS
    2021.
    DOI:10.1093/carcin/bgab024 (Copy DOI)
    66.
    Molecular stratifications, biomarker candidates and new therapeutic options in current medulloblastoma treatment approaches
    Menyhárt, O;Gyorffy, B
    Q1
    CANCER AND METASTASIS REVIEWS
    2020.
    DOI:10.1007/s10555-020-09854-1 (Copy DOI)
    67.
    PVT1 is a stress-responsive lncRNA that drives ovarian cancer metastasis and chemoresistance
    Tabury, K;Monavarian, M;Listik, E;Shelton, AK;Choi, AS;Quintens, R;Arend, RC;Hempel, N;Miller, CR;Györrfy, B;Mythreye, K
    D1
    LIFE SCIENCE ALLIANCE
    2022.
    DOI:10.26508/lsa.202201370 (Copy DOI)
    68.
    Genomic Signatures of Immune Activation Predict Outcome in Advanced Stages of Ovarian Cancer and Basal-Like Breast Tumors
    Alcaraz-Sanabria, A;Piqué, MB;Saiz-Ladera, C;Rojas, K;Manzano, A;Marquina, G;Casado, A;Cimas, FJ;Pérez-Segura, P;Pandiella, A;Gyorffy, B;Ocana, A
    Q1
    FRONTIERS IN ONCOLOGY
    2020.
    DOI:10.3389/fonc.2019.01486 (Copy DOI)
    69.
    Salinity tolerance and desalination properties of a Haematococcus lacustris strain from eastern Hungary
    Bacsi, I;Figler, A;Simon, E;Yaqoob, MM;Marton, K;B-Beres, V
    Q1
    FRONTIERS IN MICROBIOLOGY
    2024.
    DOI:10.3389/fmicb.2024.1332642 (Copy DOI)
    Semmelweis University authors: Figler, Aida,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    70.
    Translocon-associated Protein Subunit SSR3 Determines and Predicts Susceptibility to Paclitaxel in Breast Cancer and Glioblastoma
    Dmello, C;Sonabend, A;Arrieta, VA;Zhang, DY;Kanojia, D;Chen, L;Gould, A;Zhang, JS;Kang, SJ;Winter, J;Horbinski, C;Amidei, C;Gyorffy, B;Cordero, A;Chang, CL;Castro, B;Hsu, PT;Ahmed, AU;Lesniak, MS;Stupp, R;Sonabend, AM
    D1
    CLINICAL CANCER RESEARCH
    2022.
    DOI:10.1158/1078-0432.CCR-21-2563 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    71.
    Proteomic analysis of brain metastatic lung adenocarcinoma reveals intertumoral heterogeneity and specific alterations associated with the timing of brain metastases
    Woldmar, N;Schwendenwein, A;Kuras, M;Szeitz, B;Boettiger, K;Tisza, A;László,;Reiniger, L;Bagó, AG;Szállási, Z;Moldvay, J;Szász, AM;Malm, J;Horvatovich, P;Pizzatti, L;Domont, GB;Rényi-Vámos, F;Hoetzenecker, K;Hoda, MA;Marko-Varga, G;Schelch, K;Megyesfalvi, Z;Rezeli, M;Döme, B
    Q1
    ESMO OPEN
    2023.
    DOI:10.1016/j.esmoop.2022.100741 (Copy DOI)
    72.
    RIP140 inhibits glycolysis-dependent proliferation of breast cancer cells by regulating GLUT3 expression through transcriptional crosstalk between hypoxia induced factor and p53
    Jacquier, V;Gitenay, D;Fritsch, S;Bonnet, S;Gyorffy, B;Jalaguier, S;Linares, LK;Cavaillès, V;Teyssier, C
    D1
    CELLULAR AND MOLECULAR LIFE SCIENCES
    2022.
    DOI:10.1007/s00018-022-04277-3 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    73.
    Tetraspanin 6 is a regulator of carcinogenesis in colorectal cancer
    Andrijes, R;Hejmadi, RK;Pugh, M;Rajesh, S;Novitskaya, V;Ibrahim, M;Overduin, M;Tselepis, C;Middleton, GW;Gyorffy, B;Beggs, AD;Berditchevski, F
    D1
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OFAMERICA
    2021.
    DOI:10.1073/pnas.2011411118 (Copy DOI)
    74.
    Selenoproteins and tRNA-Sec: regulators of cancer redox homeostasis
    DeAngelo, SL;Gyorffy, B;Koutmos, M;Shah, YM
    D1
    TRENDS IN CANCER
    2023.
    DOI:10.1016/j.trecan.2023.08.003 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    75.
    COVIDOUTCOME-estimating COVID severity based on mutation signatures in the SARS-CoV-2 genome
    Nagy, A;Ligeti, B;Szebeni, J;Pongor, S;Gyrffy, B
    D1
    DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
    2021.
    DOI:10.1093/database/baab020 (Copy DOI)
    76.
    In silico transcriptomic mapping of integrins and immune activation in Basal-like and HER2+breast cancer
    Rojas, K;Baliu-Piqué, M;Manzano, A;Saiz-Ladera, C;García-Barberán, V;Cimas, FJ;Pérez-Segura, P;Pandiella, A;Gyorffy, B;Ocana, A
    Q1
    CELLULAR ONCOLOGY
    2021.
    DOI:10.1007/s13402-020-00583-9 (Copy DOI)
    77.
    STAT3 in acute myeloid leukemia facilitates natural killer cell-mediated surveillance
    Witalisz-Siepracka, A;Denk, CM;Zdársky, B;Hofmann, L;Edtmayer, S;Harm, T;Weiss, S;Heindl, K;Hessenberger, M;Summer, S;Dutta, S;Casanova, E;Obermair, GJ;Gyorffy, B;Putz, EM;Sill, H;Stoiber, D
    Q1
    FRONTIERS IN IMMUNOLOGY
    2024.
    DOI:10.3389/fimmu.2024.1374068 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    78.
    Linear motifs regulating protein secretion, sorting and autophagy in Leishmania parasites are diverged with respect to their host equivalents
    Zeke, A;Gibson, TJ;Dobson, L
    D1
    PLOS COMPUTATIONAL BIOLOGY
    2024.
    DOI:10.1371/journal.pcbi.1011902 (Copy DOI)
    Semmelweis University authors: Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    79.
    Identification of a neural development gene expression signature in colon cancer stem cells reveals a role for EGR2 in tumorigenesis
    Regan, JL;Schumacher, D;Staudte, S;Steffen, A;Lesche, R;Toedling, J;Jourdan, T;Haybaeck, J;Golob-Schwarzl, N;Mumberg, D;Henderson, D;Gyorffy, B;Regenbrecht, CRA;Keilholz, U;Schäfer, R;Lange, M
    D1
    ISCIENCE
    2022.
    DOI:10.1016/j.isci.2022.104498 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    80.
    High FOXA1 levels induce ER transcriptional reprogramming, a pro-metastatic secretome, and metastasis in endocrine-resistant breast cancer
    Fu, XY;Pereira, R;Liu, CC;De Angelis, C;Shea, MJ;Nanda, S;Qin, LF;Mitchell, T;Cataldo, ML;Veeraraghavan, J;Sethunath, V;Giuliano, M;Gutierrez, C;Gyorffy, B;Trivedi, M;Cohen, O;Wagle, N;Nardone, A;Jeselsohn, R;Rimawi, MF;Osborne, CK;Schiff, R
    D1
    CELL REPORTS
    2023.
    DOI:10.1016/j.celrep.2023.112821 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    81.
    New Transcriptomic Biomarkers of 5-Fluorouracil Resistance
    Fekete, JT;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2023.
    DOI:10.3390/ijms24021508 (Copy DOI)
    82.
    miRNAs in the Box: Potential Diagnostic Role for Extracellular Vesicle-Packaged miRNA-27a and miRNA-128 in Breast Cancer
    Giordano, C;Accattatis, FM;Gelsomino, L;Del Console, P;Gyorffy, B;Giuliano, M;Veneziani, BM;Arpino, G;De Angelis, C;De Placido, P;Pietroluongo, E;Zinno, F;Bonofiglio, D;Andò, S;Barone, I;Catalano, S
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2023.
    DOI:10.3390/ijms242115695 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    83.
    ERα/LKB1 complex upregulates E-cadherin expression and stimulates breast cancer growth and progression upon adiponectin exposure
    Naimo, GD;Forestiero, M;Paoli, A;Malivindi, R;Gelsomino, L;Gyorffy, B;Leonetti, AE;Giordano, F;Panza, S;Conforti, FL;Ruffo, P;Panno, ML;Mauro, L;Andò, S
    Q1
    INTERNATIONAL JOURNAL OF CANCER
    2023.
    DOI:10.1002/ijc.34626 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    84.
    SETD3 acts as a prognostic marker in breast cancer patients and modulates the viability and invasion of breast cancer cells
    Hassan, N;Rutsch, N;Gyorffy, B;Espinoza-Sánchez, NA;Götte, M
    D1
    SCIENTIFIC REPORTS
    2020.
    DOI:10.1038/s41598-020-59057-5 (Copy DOI)
    85.
    Potential Role of the Antidepressants Fluoxetine and Fluvoxamine in the Treatment of COVID-19
    Mahdi, M;Hermán, L;Réthelyi, JM;Bálint, BL
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2022.
    DOI:10.3390/ijms23073812 (Copy DOI)
    86.
    Breast cancers with high proliferation and low ER-related signalling have poor prognosis and unique molecular features with implications for therapy
    Licata, L;Barreca, M;Galbardi, B;Dugo, M;Viale, G;Gyorffy, B;Karn, T;Pusztai, L;Gianni, L;Callari, M;Bianchini, G
    D1
    BRITISH JOURNAL OF CANCER
    2023.
    DOI:10.1038/s41416-023-02477-7 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    87.
    Frequent CHD1 deletions in prostate cancers of African American men is associated with rapid disease progression
    Diossy, M;Tisza, V;Li, H;Sahgal, P;Zhou, J;Sztupinszki, Z;Young, D;Nousome, D;Kuo, C;Jiang, JJ;Chen, YM;Ebner, R;Sesterhenn, IA;Moncur, JT;Chesnut, GT;Petrovics, G;Klus, GT;Valcz, G;Nuzzo, PV;Ribli, D;Boercsoek, J;Prosz, A;Krzystanek, M;Ried, T;Szuts, D;Rizwan, K;Kaochar, S;Pathania, S;D'Andrea, AD;Csabai, I;Srivastava, S;Freedman, ML;Dobi, A;Spisak, S;Szallasi, Z
    D1
    NPJ PRECISION ONCOLOGY
    2024.
    DOI:10.1038/s41698-024-00705-8 (Copy DOI)
    88.
    Induction of APOBEC3B expression by chemotherapy drugs is mediated by DNA-PK-directed activation of NF-κB
    Periyasamy, M;Singh, AK;Gemma, C;Farzan, R;Allsopp, RC;Shaw, JA;Charmsaz, S;Young, LS;Cunnea, P;Coombes, RC;Gyorffy, B;Buluwela, L;Ali, S
    D1
    ONCOGENE
    2021.
    DOI:10.1038/s41388-020-01583-7 (Copy DOI)
    89.
    Prognostic significance of hedgehog signaling network-related gene expression in breast cancer patients
    Kuehn, J;Espinoza-Sanchez, NA;Teixeira, FCOB;Pavao, MSG;Kiesel, L;Gyorffy, B;Greve, B;Götte, M
    Q2
    JOURNAL OF CELLULAR BIOCHEMISTRY
    2021.
    DOI:10.1002/jcb.29886 (Copy DOI)
    90.
    Gene Expression Profiling in Early Breast Cancer-Patient Stratification Based on Molecular and Tumor Microenvironment Features
    Munkácsy, G;Santarpia, L;Gyorffy, B
    Q1
    BIOMEDICINES
    2022.
    DOI:10.3390/biomedicines10020248 (Copy DOI)
    91.
    Clinical Correlations of Polycomb Repressive Complex 2 in Different Tumor Types
    Erokhin, M;Chetverina, O;Gyorffy, B;Tatarskiy, VV;Mogila, V;Shtil, AA;Roninson, IB;Moreaux, J;Georgiev, P;Cavalli, G;Chetverina, D
    Q1
    CANCERS
    2021.
    DOI:10.3390/cancers13133155 (Copy DOI)
    92.
    TGF-β1 potentiates Vγ9Vδ2 T cell adoptive immunotherapy of cancer
    Beatson, RE;Parente-Pereira, AC;Halim, L;Cozzetto, D;Hull, C;Whilding, LM;Martinez, O;Taylor, CA;Obajdin, J;Hoang, KNL;Draper, B;Iqbal, A;Hardiman, T;Zabinski, T;Man, F;de Rosales, RTM;Xie, J;Aswad, F;Achkova, D;Joseph, CYR;Ciprut, S;Adami, A;Roider, HG;Hess-Stumpp, H;Gyorffy, B;Quist, J;Grigoriadis, A;Sommer, A;Tutt, ANJ;Davies, DM;Maher, J
    D1
    CELL REPORTS MEDICINE
    2021.
    DOI:10.1016/j.xcrm.2021.100473 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    93.
    ATM deficiency confers specific therapeutic vulnerabilities in bladder cancer
    Zhou, YZ;Börcsök, J;Adib, E;Kamran, SC;Neil, AJ;Stawiski, K;Freeman, D;Stormoen, DR;Sztupinszki, Z;Samant, A;Nassar, A;Bekele, RT;Hanlon, T;Valentine, H;Epstein, I;Sharma, B;Felt, K;Abbosh, P;Wu, CL;Efstathiou, JA;Miyamoto, DT;Anderson, W;Szallasi, Z;Mouw, KW
    D1
    SCIENCE ADVANCES
    2023.
    DOI:10.1126/sciadv.adg2263 (Copy DOI)
    94.
    Therapeutic Potential of Tumor Metabolic Reprogramming in Triple-Negative Breast Cancer
    Munkácsy, G;Santarpia, L;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2023.
    DOI:10.3390/ijms24086945 (Copy DOI)
    95.
    Transcriptomic Mapping of Non-Small Cell Lung Cancer K-RAS p.G12C Mutated Tumors: Identification of Surfaceome Targets and Immunologic Correlates
    Alcaraz-Sanabria, A;Morafraile, EC;Fernandez-Hinojal, G;Velasco, G;Perez-Segura, P;Pandiella, A;Gyorffy, B;Ocana, A
    Q1
    FRONTIERS IN IMMUNOLOGY
    2022.
    DOI:10.3389/fimmu.2021.786069 (Copy DOI)
    96.
    The Prognostic Relevance of the Proliferation Markers Ki-67 and Plk1 in Early-Stage Ovarian Cancer Patients With Serous, Low-Grade Carcinoma Based on mRNA and Protein Expression
    Rödel, F;Zhou, ST;Gyorffy, B;Raab, M;Sanhaji, M;Mandal, R;Martin, D;Becker, S;Strebhardt, K
    Q1
    FRONTIERS IN ONCOLOGY
    2020.
    DOI:10.3389/fonc.2020.558932 (Copy DOI)
    97.
    The Driverless Triple-Wild-Type (BRAF, RAS, KIT) Cutaneous Melanoma: Whole Genome Sequencing Discoveries
    Pipek, O;Vizkeleti, L;Doma, V;Alpár, D;Bödör, C;Kárpáti, S;Timar, J
    Q1
    CANCERS
    2023.
    DOI:10.3390/cancers15061712 (Copy DOI)
    98.
    GTP Cyclohydrolase Drives Breast Cancer Development and Promotes EMT in an Enzyme-Independent Manner
    Wang, ZJ;Zhang, N;Zhang, M;Jiang, Y;Ng, AS;Bridges, E;Zhang, W;Zeng, X;Luo, Q;Liang, JB;Gyorffy, B;Hublitz, P;Liang, Z;Fischer, R;Kerr, D;Harris, AL;Cai, SJ
    D1
    CANCER RESEARCH
    2023.
    DOI:10.1158/0008-5472.CAN-22-3471 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    99.
    Diagnosis of genetic disorders in childhood with next-generation sequencing
    Otília, M;Balázs, G;András, S
    Q4
    ORVOSI HETILAP
    2022.
    DOI:10.1556/650.2022.32688 (Copy DOI)
    100.
    Multispectral Imaging Algorithm Predicts Breslow Thickness of Melanoma
    Bozsányi, S;Varga, NN;Farkas, K;Bánvölgyi, A;Lorincz, K;Lihacova, I;Lihachev, A;Plorina, EV;Bartha, A;Jobbágy, A;Kuroli, E;Paragh, G;Holló, P;Medvecz, M;Kiss, N;Wikonkál, NM
    Q1
    JOURNAL OF CLINICAL MEDICINE
    2022.
    DOI:10.3390/jcm11010189 (Copy DOI)
    101.
    Analysis of circulating extracellular vesicle derived microRNAs in breast cancer patients with obesity: a potential role for Let-7a
    Barone, I;Gelsomino, L;Accattatis, FM;Giordano, F;Gyorffy, B;Panza, S;Giuliano, M;Veneziani, BM;Arpino, G;De Angelis, C;De Placido, P;Bonofiglio, D;Andò, S;Giordano, C;Catalano, S
    D1
    JOURNAL OF TRANSLATIONAL MEDICINE
    2023.
    DOI:10.1186/s12967-023-04075-w (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    102.
    miRNA Expression Signatures of Therapy Response in Squamous Cell Carcinomas
    Fekete, JT;Welker, A;Gyorffy, B
    Q1
    CANCERS
    2021.
    DOI:10.3390/cancers13010063 (Copy DOI)
    103.
    The hyaluronan-related genes HAS2, HYAL1-4, PH20 and HYALP1 are associated with prognosis, cell viability and spheroid formation capacity in ovarian cancer
    Riecks, J;Parnigoni, A;Gyorffy, B;Kiesel, L;Passi, A;Vigetti, D;Götte, M
    Q1
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY
    2022.
    DOI:10.1007/s00432-022-04127-6 (Copy DOI)
    104.
    HOXA5-Mediated Stabilization of IkB? Inhibits the NF-kB Pathway and Suppresses Malignant Transformation of Breast Epithelial Cells
    Pai, PY;Wang, GN;Teo, WW;Raez-Rodriguez, D;Gabrielson, KL;Gyorffy, B;Downs, BM;Aggarwal, A;Sukumar, S
    D1
    CANCER RESEARCH
    2022.
    DOI:10.1158/0008-5472.CAN-21-4277 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    105.
    The autocrine loop of ALK receptor and ALKAL2 ligand is an actionable target in consensus molecular subtype 1 colon cancer
    Mazzeschi, M;Sgarzi, M;Romaniello, D;Gelfo, V;Cavallo, C;Ambrosi, F;Morselli, A;Miano, C;Laprovitera, N;Girone, C;Ferracin, M;Santi, S;Rihawi, K;Ardizzoni, A;Fiorentino, M;D'Uva, G;Gyorffy, B;Palmer, R;Lauriola, M
    Q1
    JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH
    2022.
    DOI:10.1186/s13046-022-02309-1 (Copy DOI)
    106.
    How AlphaFold2 shaped the structural coverage of the human transmembrane proteome
    Jambrich, MA;Tusnady, GE;Dobson, L
    D1
    SCIENTIFIC REPORTS
    2023.
    DOI:10.1038/s41598-023-47204-7 (Copy DOI)
    Semmelweis University authors: Tusnády, Gábor, Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    107.
    Emergency Use and Efficacy of an Asynchronous Teledermatology System as a Novel Tool for Early Diagnosis of Skin Cancer during the First Wave of COVID-19 Pandemic
    Jobbagy, A;Kiss, N;Meznerics, FA;Farkas, K;Plázár, D;Bozsányi, S;Fésus, L;Bartha, A;Szabó, E;Lórincz, K;Sárdy, M;Wikonkál, NM;Szoldán, P;Banvölgyi, A
    Q2
    INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH
    2022.
    DOI:10.3390/ijerph19052699 (Copy DOI)
    108.
    Prognostic impact of the glypican family of heparan sulfate proteoglycans on the survival of breast cancer patients
    Grillo, PK;Gyorffy, B;Götte, M
    Q1
    JOURNAL OF CANCER RESEARCH AND CLINICAL ONCOLOGY
    2021.
    DOI:10.1007/s00432-021-03597-4 (Copy DOI)
    109.
    Mapping of Genomic Vulnerabilities in the Post-Translational Ubiquitination, SUMOylation and Neddylation Machinery in Breast Cancer
    Fuentes-Antrás, J;Alcaraz-Sanabria, AL;Morafraile, EC;Noblejas-López, MD;Galán-Moya, EM;Baliu-Pique, M;López-Cade, I;García-Barberán, V;Pérez-Segura, P;Manzano, A;Pandiella, A;Gyorffy, B;Ocaña, A
    Q1
    CANCERS
    2021.
    DOI:10.3390/cancers13040833 (Copy DOI)
    110.
    Analyses of Genes Critical to Tumor Survival Reveal Potential 'Supertargets': Focus on Transcription
    Chetverina, D;Vorobyeva, NE;Gyorffy, B;Shtil, AA;Erokhin, M
    Q1
    CANCERS
    2023.
    DOI:10.3390/cancers15113042 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    111.
    GAS2L1 Is a Potential Biomarker of Circulating Tumor Cells in Pancreatic Cancer
    Zhu, L;Kan, KJ;Grün, JL;Hissa, B;Yang, C;Gyorffy, B;Loges, S;Reissfelder, C;Schölch, S
    Q1
    CANCERS
    2020.
    DOI:10.3390/cancers12123774 (Copy DOI)
    112.
    The Prognostic Relevance of PMCA4 Expression in Melanoma: Gender Specificity and Implications for Immune Checkpoint Inhibition
    Hegedüs, L;Livingstone, E;Bánkfalvi, A;Viehof, J;Enyedi, A;Bilecz, A;Gyorffy, B;Baranyi, M;Tokés, AM;Gil, J;Marko-Varga, G;Griewank, KG;Zimmer, L;Váraljai, R;Sucker, A;Zaremba, A;Schadendorf, D;Aigner, C;Hegedüs, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2022.
    DOI:10.3390/ijms23063324 (Copy DOI)
    113.
    Identifying regulators of aberrant stem cell and differentiation activity in colorectal cancer using a dual endogenous reporter system
    Spisak, S;Chen, DV;Likasitwatanakul, P;Doan, P;Li, ZX;Bala, P;Vizkeleti, L;Tisza, V;De Silva, P;Giannakis, M;Wolpin, B;Qi, J;Sethi, NS
    D1
    NATURE COMMUNICATIONS
    2024.
    DOI:10.1038/s41467-024-46285-w (Copy DOI)
    Semmelweis University authors: Vízkeleti, Laura,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    114.
    Novel Insights into the Antagonistic Effects of Losartan against Angiotensin II/AGTR1 Signaling in Glioblastoma Cells
    Panza, S;Malivindi, R;Caruso, A;Russo, U;Giordano, F;Gyorffy, B;Gelsomino, L;De Amicis, F;Barone, I;Conforti, FL;Giordano, C;Bonofiglio, D;Catalano, S;Andò, S
    Q1
    CANCERS
    2021.
    DOI:10.3390/cancers13184555 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    115.
    Transcriptomic and Cellular Content Analysis of Colorectal Cancer by Combining Multiple Independent Cohorts
    Kothalawala, WJ;Gyorffy, B
    Q1
    CLINICAL AND TRANSLATIONAL GASTROENTEROLOGY
    2023.
    DOI:10.14309/ctg.0000000000000517 (Copy DOI)
    116.
    A quantitative polymerase chain reaction based method for molecular subtype classification of urinary bladder cancer-Stromal gene expressions show higher prognostic values than intrinsic tumor genes
    Olah, C;Hahnen, C;Nagy, N;Musial, J;Varadi, M;Nyiro, G;Gyorffy, B;Hadaschik, B;Rawitzer, J;Ting, SS;Sjödahl, G;Hoffmann, MJ;Reis, H;Szarvas, T
    Q1
    INTERNATIONAL JOURNAL OF CANCER
    2022.
    DOI:10.1002/ijc.33809 (Copy DOI)
    117.
    Long-Term Exposure of Early-Transformed Human Mammary Cells to Low Doses of Benzo[a]pyrene and/or Bisphenol A Enhances Their Cancerous Phenotype via an AhR/GPR30 Interplay
    Donini, CF;El Helou, M;Wierinckx, A;Gyorffy, B;Aires, S;Escande, A;Croze, S;Clezardin, P;Lachuer, J;Diab, M;Ghayad, SE;Fervers, B;Cavaillès, V;Maguer-Satta, V;Cohen, PA
    Q1
    FRONTIERS IN ONCOLOGY
    2020.
    DOI:10.3389/fonc.2020.00712 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    118.
    Concomitant activation of GLI1 and Notch1 contributes to racial disparity of human triple negative breast cancer progression
    Siddharth, S;Parida, S;Muniraj, N;Hercules, S;Lim, D;Nagalingam, A;Wang, CG;Gyorffy, B;Daniel, JM;Sharma, D
    D1
    ELIFE
    2021.
    DOI:10.7554/eLife.70729; 10.7554/eLife.70729.sa0; 10.7554/eLife.70729.sa1;10.7554/eLife.70729.sa2 (Copy DOI)
    119.
    Synthesis and Application of Two-Photon Active Fluorescent Rhodol Dyes for Antibody Conjugation and In Vitro Cell Imaging
    Kovács, DS;Chiovini, B;Müller, D;Tóth, EZ;Fülöp, A;Abrányi-Balogh, P;Wittner, L;Várady, G;Farkas, Ö;Turczel, G;Katona, G;Gyorffy, B;Keseru, GM;Mucsi, Z;Rózsa, BJ;Kovács, E
    Q2
    ACS OMEGA
    2023.
    DOI:10.1021/acsomega.3c01796 (Copy DOI)
    120.
    Deciphering the Role and Signaling Pathways of PKCα in Luminal A Breast Cancer Cells
    Serrano-López, EM;Coronado-Parra, T;Marín-Vicente, C;Szallasi, Z;Gómez-Abellán, V;López-Andreo, MJ;Gragera, M;Gómez-Fernández, JC;López-Nicolás, R;Corbalán-García, S
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2022.
    DOI:10.3390/ijms232214023 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    121.
    Genome-wide alterations of uracil distribution patterns in human DNA upon chemotherapeutic treatments
    Pálinkás, HL;Békési, A;Róna, G;Pongor, L;Papp, G;Tihanyi, G;Holub, E;Póti, A;Gemma, C;Ali, S;Morten, MJ;Rothenberg, E;Pagano, M;Szuts, D;Gyorffy, B;Vertéssy, BG
    D1
    ELIFE
    2020.
    DOI:10.7554/eLife.60498 (Copy DOI)
    122.
    Large-Scale Plasma Proteome Epitome Profiling is an Efficient Tool for the Discovery of Cancer Biomarkers
    Lazar, J;Antal-Szalmas, P;Kurucz, I;Ferenczi, A;Jozsi, M;Tornyi, I;Muller, M;Fekete, JT;Lamont, J;Fitzgerald, P;Gall-Debreceni, A;Kadas, J;Vida, A;Tardieu, N;Kieffer, Y;Jullien, A;Guergova-Kuras, M;Hempel, W;Kovacs, A;Kardos, T;Bittner, N;Csanky, E;Szilasi, M;Losonczy, G;Szondy, K;Galffy, G;Csada, E;Szalontai, K;Somfay, A;Malka, D;Cottu, P;Bogos, K;Takacs, L
    D1
    MOLECULAR & CELLULAR PROTEOMICS
    2023.
    DOI:10.1016/j.mcpro.2023.100580 (Copy DOI)
    123.
    Modelling hypersensitivity to trastuzumab defines biomarkers of response in HER2 positive breast cancer
    Díaz-Gil, L;Brasó-Maristany, F;Locatelli, C;Centa, A;Gyorffy, B;Ocaña, A;Prat, A;Pandiella, A
    D1
    JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH
    2021.
    DOI:10.1186/s13046-021-02098-z (Copy DOI)
    124.
    PARP2 poly(ADP-ribosyl)ates nuclear factor erythroid 2-related factor 2 (NRF2) affecting NRF2 subcellular localization
    Jankó, L;Tóth, E;Laczik, M;Rauch, B;Janka, E;Bálint, BL;Bai, P
    D1
    SCIENTIFIC REPORTS
    2023.
    DOI:10.1038/s41598-023-35076-w (Copy DOI)
    Semmelweis University authors: Bálint, Bálint László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    125.
    Mapping Immune Correlates and Surfaceome Genes in BRAF Mutated Colorectal Cancers
    Morafraile, EC;Saiz-Ladera, C;Nieto-Jiménez, C;Gyorffy, B;Nagy, A;Velasco, G;Pérez-Segura, P;Ocaña, A
    Q2
    CURRENT ONCOLOGY
    2023.
    DOI:10.3390/curroncol30030196 (Copy DOI)
    126.
    A bioinformatic analysis of the inhibin-betaglycan-endoglin/CD105 network reveals prognostic value in multiple solid tumors
    Listik, E;Horst, B;Choi, AS;Lee, NY;Gyorffy, B;Mythreye, K
    Q1
    PLOS ONE
    2021.
    DOI:10.1371/journal.pone.0249558 (Copy DOI)
    127.
    Circulating miRNAs and Machine Learning for Lateralizing Primary Aldosteronism
    Vékony, B;Nyiro, G;Herold, Z;Fekete, J;Ceccato, F;Gruber, S;Kürzinger, L;Parasiliti-Caprino, M;Bioletto, F;Szücs, N;Doros, A;Szeredás, BK;Nazri, SKSM;Fell, V;Bassiony, M;Dank, M;Azizan, EA;Bancos, I;Beuschlein, F;Igaz, P
    D1
    HYPERTENSION
    2024.
    DOI:10.1161/HYPERTENSIONAHA.124.23418 (Copy DOI)
    128.
    In Vitro Insertional Mutagenesis Screen Identifies Novel Genes Driving Breast Cancer Metastasis
    Miskey, C;Botezatu, L;Temiz, NA;Gogol-Döring, A;Bartha, A;Gyorffy, B;Largaespada, DA;Ivics, Z;Sebe, A
    Q1
    MOLECULAR CANCER RESEARCH
    2022.
    DOI:10.1158/1541-7786.MCR-21-0772 (Copy DOI)
    129.
    LeishMANIAdb: a comparative resource for Leishmania proteins
    Tusnády, GE;Zeke, A;Kálmán, ZE;Fatoux, M;Ricard-Blum, S;Gibson, TJ;Dobson, L
    D1
    DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION
    2023.
    DOI:10.1093/database/baad074 (Copy DOI)
    Semmelweis University authors: Tusnády, Gábor, Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    130.
    Development and validation of a gene expression-based Breast Cancer Purity Score
    Barreca, M;Dugo, M;Galbardi, B;Gyorffy, B;Valagussa, P;Besozzi, D;Viale, G;Bianchini, G;Gianni, L;Callari, M
    D1
    NPJ PRECISION ONCOLOGY
    2024.
    DOI:10.1038/s41698-024-00730-7 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    131.
    Mutational signature-based identification of DNA repair deficient gastroesophageal adenocarcinomas for therapeutic targeting
    Prosz, A;Sahgal, P;Huffman, BM;Sztupinszki, Z;Morris, CX;Chen, DV;Börcsök, J;Diossy, M;Tisza, V;Spisak, S;Likasitwatanakul, P;Rusz, O;Csabai, I;Cecchini, M;Baca, Y;Elliot, A;Enzinger, P;Singh, H;Ubellaker, J;Lazaro, JB;Cleary, JM;Szallasi, Z;Sethi, NS
    D1
    NPJ PRECISION ONCOLOGY
    2024.
    DOI:10.1038/s41698-024-00561-6 (Copy DOI)
    132.
    Predicting immune checkpoint therapy response in three independent metastatic melanoma cohorts
    Szadai, L;Bartha, A;Parada, IP;Lakatos, AIT;Pál, DMP;Lengyel, AS;de Almeida, NP;Janosi, AJ;Nogueira, F;Szeitz, B;Doma, V;Woldmar, N;Guedes, J;Ujfaludi, Z;Pahi, ZG;Pankotai, T;Kim, Y;Gyorffy, B;Baldetorp, B;Welinder, C;Szasz, AM;Betancourt, L;Gil, J;Appelqvist, R;Kwon, HJ;Kárpáti, S;Kuras, M;Murillo, JR;Németh, IB;Malm, J;Fenyö, D;Pawlowski, K;Horvatovich, P;Wieslander, E;Kemény, LV;Domont, G;Marko-Varga, G;Sanchez, A
    Q2
    FRONTIERS IN ONCOLOGY
    2024.
    DOI:10.3389/fonc.2024.1428182 (Copy DOI)
    133.
    RNA sequencing of long-term label-retaining colon cancer stem cells identifies novel regulators of quiescence
    Regan, JL;Schumacher, D;Staudte, S;Steffen, A;Lesche, R;Toedling, J;Jourdan, T;Haybaeck, J;Mumberg, D;Henderson, D;Gyorffy, B;Regenbrecht, CRA;Keilholz, U;Schäfer, R;Lange, M
    D1
    ISCIENCE
    2021.
    DOI:10.1016/j.isci.2021.102618 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    134.
    Genomic Mapping of Splicing-Related Genes Identify Amplifications in LSM1, CLNS1A, and ILF2 in Luminal Breast Cancer
    Noblejas-López, MD;López-Cade, I;Fuentes-Antrás, J;Fernández-Hinojal, G;Esteban-Sánchez, A;Manzano, A;García-Sáenz, JA;Pérez-Segura, P;De la Hoya, M;Pandiella, A;Gyorffy, B;García-Barberán, V;Ocaña, A
    Q1
    CANCERS
    2021.
    DOI:10.3390/cancers13164118 (Copy DOI)
    135.
    Effective synthesis, development and application of a highly fluorescent cyanine dye for antibody conjugation and microscopy imaging
    Kovács, DS;Kontra, B;Chiovini, B;Müller, D;Tóth, EZ;Abranyi-Balogh, P;Wittner, L;Várady, G;Turczel, G;Farkas, Ö;Owen, MC;Katona, G;Gyorffy, B;Keseru, GM;Mucsi, Z;Rózsa, BJ;Kovács, E
    Q2
    ORGANIC & BIOMOLECULAR CHEMISTRY
    2023.
    DOI:10.1039/d3ob01471a (Copy DOI)
    136.
    PD-1 and PD-L1 expression in rare lung tumors
    Gyulai, M;Megyesfalvi, Z;Reiniger, L;Harko, T;Ferencz, B;Karsko, L;Agocs, L;Fillinger, J;Dome, B;Szallasi, Z;Moldvay, J
    Q2
    PATHOLOGY & ONCOLOGY RESEARCH
    2023.
    DOI:10.3389/pore.2023.1611164 (Copy DOI)
    137.
    Claudin expression in pulmonary adenoid cystic carcinoma and mucoepidermoid carcinoma
    Gyulai, M;Harko, T;Fabian, K;Karsko, L;Agocs, L;Szigeti, B;Fillinger, J;Szallasi, Z;Pipek, O;Moldvay, J
    Q2
    PATHOLOGY & ONCOLOGY RESEARCH
    2023.
    DOI:10.3389/pore.2023.1611328 (Copy DOI)
    138.
    T-reg transcriptomic signatures identify response to check-point inhibitors
    Noblejas-López, MD;García-Gil, E;Pérez-Segura, P;Pandiella, A;Gyorffy, B;Ocaña, A
    Q1
    SCIENTIFIC REPORTS
    2024.
    DOI:10.1038/s41598-024-60819-8 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    139.
    Aberrant MET activation impairs perinuclear actin cap organization with YAP1 cytosolic relocation
    Sgarzi, M;Mazzeschi, M;Santi, S;Montacci, E;Panciera, T;Ferlizza, E;Girone, C;Morselli, A;Gelfo, V;Kuhre, RS;Cavallo, C;Valente, S;Pasquinelli, G;Gyorffy, B;D'Uva, G;Romaniello, D;Lauriola, M
    D1
    COMMUNICATIONS BIOLOGY
    2023.
    DOI:10.1038/s42003-023-05411-y (Copy DOI)
    140.
    Replicative stress in gastroesophageal cancer is associated with chromosomal instability and sensitivity to DNA damage response inhibitors
    Sahgal, P;Patil, DT;Bala, P;Sztupinszki, ZM;Tisza, V;Spisak, S;Luong, AG;Huffman, B;Prosz, A;Singh, H;Lazaro, JB;Szallasi, Z;Cleary, JM;Sethi, NS
    D1
    ISCIENCE
    2023.
    DOI:10.1016/j.isci.2023.108169 (Copy DOI)
    141.
    Nucleotide excision repair deficiency is a targetable therapeutic vulnerability in clear cell renal cell carcinoma
    Prosz, A;Duan, HH;Tisza, V;Sahgal, P;Topka, S;Klus, GT;Boercsoek, J;Sztupinszki, Z;Hanlon, T;Diossy, M;Vizkeleti, L;Stormoen, DR;Csabai, I;Pappot, H;Vijai, J;Offit, K;Ried, T;Sethi, N;Mouw, KW;Spisak, S;Pathania, S;Szallasi, Z
    D1
    SCIENTIFIC REPORTS
    2023.
    DOI:10.1038/s41598-023-47946-4 (Copy DOI)
    Semmelweis University authors: Vízkeleti, Laura, Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    142.
    Resistance to Combined Anthracycline-Taxane Chemotherapy Is Associated with Altered Metabolism and Inflammation in Breast Carcinomas
    Menyhárt, O;Fekete, JT;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms25021063 (Copy DOI)
    143.
    Genomic and Immunologic Correlates in Prostate Cancer with High Expression of KLK2
    Paniagua-Herranz, L;Moreno, I;Nieto-Jiménez, C;Garcia-Lorenzo, E;Díaz-Tejeiro, C;Sanvicente, A;Doger, B;Pedregal, M;Ramón, J;Bartolomé, J;Manzano, A;Gyorffy, B;Gutierrez-Uzquiza, A;Segura, PP;Calvo, E;Moreno, V;Ocana, A
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms25042222 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    144.
    RIP140 regulates POLK gene expression and the response to alkylating drugs in colon cancer cells
    Palassin, P;Lapierre, M;Bonnet, S;Pillaire, MJ;Gyorffy, B;Teyssier, C;Jalaguier, S;Hoffmann, JS;Cavaillès, V;Castet-Nicolas, A
    Q2
    CANCER DRUG RESISTANCE
    2022.
    DOI:10.20517/cdr.2021.133 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    145.
    HGK promotes metastatic dissemination in prostate cancer
    Garcia-Garcia, S;Rodrigo-Faus, M;Fonseca, N;Manzano, S;Gyorffy, B;Ocaña, A;Bragado, P;Porras, A;Gutierrez-Uzquiza, A
    D1
    SCIENTIFIC REPORTS
    2021.
    DOI:10.1038/s41598-021-91292-2 (Copy DOI)
    146.
    Identification of a Tumor Cell Associated Type I IFN Resistance Gene Expression Signature of Human Melanoma, the Components of Which Have a Predictive Potential for Immunotherapy
    Ladanyi, A;Raso, E;Barbai, T;Vizkeleti, L;Puskas, LG;Kovacs, SA;Gyorffy, B;Timar, J
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2022.
    DOI:10.3390/ijms23052704 (Copy DOI)
    147.
    Transcriptomic Correlates of Immunologic Activation in Head and Neck and Cervical Cancer
    Saiz-Ladera, C;Baliu-Piqué, M;Cimas, FJ;Manzano, A;García-Barberán, V;Camarero, SC;Hinojal, GF;Pandiella, A;Gyorffy, B;Stewart, D;Cruz-Hernández, JJ;Pérez-Segura, P;Ocana, A
    Q1
    FRONTIERS IN ONCOLOGY
    2021.
    DOI:10.3389/fonc.2021.714550 (Copy DOI)
    148.
    Evaluating Individual Scientific Output Normalized to Publication Age and Academic Field Through the Scientometrics.org Project
    Gyorffy, B;Weltz, B;Munkácsy, G;Herman, P;Szabó, I
    Q1
    METHODOLOGY-EUROPEAN JOURNAL OF RESEARCH METHODS FOR THE BEHAVIORAL ANDSOCIAL SCIENCES
    2022.
    DOI:10.5964/meth.9463 (Copy DOI)
    149.
    Comparison of scientometric achievements at PhD and scientific output ten years later for 4,790 academic researchers
    Munkácsy, G;Herman, P;Györffy, B
    Q1
    PLOS ONE
    2022.
    DOI:10.1371/journal.pone.0271218 (Copy DOI)
    150.
    Spatially Resolved Proteomic and Transcriptomic Profiling of Anaplastic Lymphoma Kinase-Rearranged Pulmonary Adenocarcinomas Reveals Key Players in Inter- and Intratumoral Heterogeneity
    Szeitz, B;Glasz, T;Herold, Z;Tóth, G;Balbisi, M;Fillinger, J;Horváth, S;Mohácsi, R;Kwon, HJ;Moldvay, J;Turiák, L;Szász, AM
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2023.
    DOI:10.3390/ijms241411369 (Copy DOI)
    151.
    Prevalence of intrahepatic cholestasis of pregnancy and its association with gestational diabetes in an urban population in Hungary
    Ozsvari-Vidakovich, M;Janos, TF;Szakony, S;Theisz, J;Gasparics, R;Koermendy, M;Adam, Z;Sziller, I
    Q4
    ORVOSI HETILAP
    2023.
    DOI:10.1556/650.2023.32933 (Copy DOI)
    152.
    Exploring the Significance of the Exon 4-Skipping Isoform of the ZNF217 Oncogene in Breast Cancer
    Bellanger, A;Le, DT;Vendrell, J;Wierinckx, A;Pongor, LS;Solassol, J;Lachuer, J;Clezardin, P;Gyorffy, B;Cohen, PA
    Q1
    FRONTIERS IN ONCOLOGY
    2021.
    DOI:10.3389/fonc.2021.647269 (Copy DOI)
    Semmelweis University authors: Pongor, Lőrinc, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    153.
    Deep Proteomic Analysis on Biobanked Paraffine-Archived Melanoma with Prognostic/Predictive Biomarker Read-Out
    Szadai, L;Velasquez, E;Szeitz, B;de Almeida, NP;Domont, G;Betancourt, LH;Gil, J;Marko-Varga, M;Oskolas, H;Janosi, AJ;Boyano-Adanez, MD;Kemeny, L;Baldetorp, B;Malm, J;Horvatovich, P;Szasz, AM;Nemeth, IB;Marko-Varga, G
    Q1
    CANCERS
    2021.
    DOI:10.3390/cancers13236105 (Copy DOI)
    154.
    Association between CYP2B6 genetic variability and cyclophosphamide therapy in pediatric patients with neuroblastoma
    Mangó, K;Fekete, F;Kiss, AF;Erdos, R;Fekete, JT;Budi, T;Bruckner, E;Garami, M;Micsik, T;Monostory, K
    D1
    SCIENTIFIC REPORTS
    2023.
    DOI:10.1038/s41598-023-38983-0 (Copy DOI)
    155.
    Currently favored sampling practices for tumor sequencing can produce optimal results in the clinical setting
    Pongor, LS;Munkácsy, G;Vereczkey, I;Pete, I;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2020.
    DOI:10.1038/s41598-020-71382-3 (Copy DOI)
    156.
    Supporting grant reviewers through the scientometric ranking of applicants
    Gyorffy, B;Weltz, B;Szabó, I
    Q1
    PLOS ONE
    2023.
    DOI:10.1371/journal.pone.0280480 (Copy DOI)
    157.
    The prognostic significance of FOXC2 gene expression in cancer: A comprehensive analysis of RNA-seq data from the cancer genome atlas
    Hargadon, KM;Gyorffy, B;Strong, EW
    Q3
    CANCER GENETICS
    2021.
    DOI:10.1016/j.cancergen.2021.02.005 (Copy DOI)
    158.
    Genomic and transcriptional changes in IFNγ pathway genes are putative biomarkers of response to ipilimumab immunotherapy in melanoma patients
    Hargadon, K;Gyorffy, B;McGee, TJ
    Q2
    EXPERT REVIEW OF CLINICAL IMMUNOLOGY
    2020.
    DOI:10.1080/1744666X.2021.1847644 (Copy DOI)
    159.
    Deconstructing Immune Cell Infiltration in Human Colorectal Cancer: A Systematic Spatiotemporal Evaluation
    Agoston, EI;Acs, B;Herold, Z;Fekete, K;Kulka, J;Nagy, A;Mühl, D;Mohacsi, R;Dank, M;Garay, T;Harsanyi, L;Gyorffy, B;Szasz, AM
    Q2
    GENES
    2022.
    DOI:10.3390/genes13040589 (Copy DOI)
    160.
    RIP140 Represses Intestinal Paneth Cell Differentiation and Interplays with SOX9 Signaling in Colorectal Cancer
    Gleizes, A;Triki, M;Bonnet, S;Baccari, N;Jimenez-Dominguez, G;Covinhes, A;Pirot, N;Blache, P;Yuan, R;Gyorffy, B;Cavaillès, V;Lapierre, M
    Q1
    CANCERS
    2021.
    DOI:10.3390/cancers13133192 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    161.
    Rewired Metabolism Caused by the Oncogenic Deregulation of MYC as an Attractive Therapeutic Target in Cancers
    Vizkeleti, L;Spisák, S
    Q1
    CELLS
    2023.
    DOI:10.3390/cells12131745 (Copy DOI)
    Semmelweis University authors: Vízkeleti, Laura,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    162.
    Investigating the Prognostic Relevance of Tumor Immune Microenvironment and Immune Gene Assembly in Breast Carcinoma Subtypes
    Szeitz, B;Pipek, O;Kulka, J;Szundi, C;Rusz, O;Tokés, T;Szász, AM;Kovács, KA;Pesti, A;Ben Arie, TB;Gángó, A;Fülöp, Z;Drágus, E;Vári-Kakas, SA;Tokés, AM
    Q1
    CANCERS
    2022.
    DOI:10.3390/cancers14081942 (Copy DOI)
    163.
    DNA Polymerase Alpha Subunit B Is a Binding Protein for Erlotinib Resistance in Non-Small Cell Lung Cancer
    Kim, TY;Ji, ES;Lee, JY;Kim, JY;Yoo, JS;Szasz, AM;Dome, B;Marko-Varga, G;Kwon, HJ
    Q1
    CANCERS
    2020.
    DOI:10.3390/cancers12092613 (Copy DOI)
    164.
    Genomic mapping of copy number variations influencing immune response in breast cancer
    López-Cade, I;García-Barberán, V;Morafraile, EC;Díaz-Tejeiro, C;Saiz-Ladera, C;Sanvicente, A;Segura, PP;Pandiella, A;Gyorffy, B;Ocaña, A
    Q2
    FRONTIERS IN ONCOLOGY
    2022.
    DOI:10.3389/fonc.2022.975437 (Copy DOI)
    165.
    Primary Founder Mutations in the PRKDC Gene Increase Tumor Mutation Load in Colorectal Cancer
    Pálinkás, HL;Pongor, L;Balajti, M;Nagy, A;Nagy, K;Békési, A;Bianchini, G;Vértessy, BG;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2022.
    DOI:10.3390/ijms23020633 (Copy DOI)
    166.
    Proteotranscriptomic Discrimination of Tumor and Normal Tissues in Renal Cell Carcinoma
    Bartha, A;Darula, Z;Munkácsy, G;Klement, E;Nyirády, P;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2023.
    DOI:10.3390/ijms24054488 (Copy DOI)
    167.
    Transcriptomic Profiles of CD47 in Breast Tumors Predict Outcome and Are Associated with Immune Activation
    Noblejas-López, MD;Baliu-Piqué, M;Nieto-Jiménez, C;Cimas, FJ;Morafraile, EC;Pandiella, A;Corbi, AL;Gyorffy, B;Ocaña, A
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2021.
    DOI:10.3390/ijms22083836 (Copy DOI)
    168.
    Multi-gene assay 95- and 155-gene classifiers for prognosis prediction and chemotherapy omission in lymphnode positive luminal-type breast cancer
    Matsumoto, S;Tsunashima, R;Kitano, S;Watanabe, A;Kato, C;Morita, M;Sakaguchi, K;Gyorffy, B;Naoi, Y
    Q2
    CANCER TREATMENT AND RESEARCH COMMUNICATIONS
    2023.
    DOI:10.1016/j.ctarc.2023.100711 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    169.
    Nationwide experiences with trough levels, durability, and disease activity among inflammatory bowel disease patients following COVID-19 vaccination
    Resál, T;Bacsur, P;Horváth, M;Szántó, K;Rutka, M;Bálint, A;Fábián, A;Bor, R;Szepes, Z;Fekete, J;Farkas, K;Miheller, P;Molnár, T
    Q1
    THERAPEUTIC ADVANCES IN GASTROENTEROLOGY
    2023.
    DOI:10.1177/17562848231183529 (Copy DOI)
    170.
    Genomic Mapping of Epidermal Growth Factor Receptor and Mesenchymal-Epithelial Transition-Up-Regulated Tumors Identifies Novel Therapeutic Opportunities
    Paniagua-Herranz, L;Doger, B;Díaz-Tejeiro, C;Sanvicente, A;Nieto-Jiménez, C;Moreno, V;Segura, PP;Gyorffy, B;Calvo, E;Ocana, A
    Q1
    CANCERS
    2023.
    DOI:10.3390/cancers15123250 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    171.
    In Silico Transcriptomic Expression of MSR1 in Solid Tumors Is Associated with Responses to Anti-PD1 and Anti-CTLA4 Therapies
    Sanvicente, A;Díaz-Tejeiro, C;Nieto-Jiménez, C;Paniagua-Herranz, L;Cade, IL;Balázs, G;Moreno, V;Pérez-Segura, P;Calvo, E;Ocaña, A
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms25073987 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    172.
    Identification of genetic fingerprint of type I interferon therapy in visceral metastases of melanoma
    Vizkeleti, L;Papp, O;Doma, V;Gil, J;Marko-Varga, G;Kovács, SA;Gyorffy, B;Kárpáti, S;Timár, J
    Q1
    SCIENTIFIC REPORTS
    2024.
    DOI:10.1038/s41598-024-77285-x (Copy DOI)
    173.
    Comparative Evaluation of Open-Source Bioinformatics Pipelines for Full-Length Viral Genome Assembly
    Zsichla, L;Zeeb, M;Fazekas, D;Ay, E;Müller, D;Metzner, KJ;Kouyos, RD;Müller, V
    Q1
    VIRUSES-BASEL
    2024.
    DOI:10.3390/v16121824 (Copy DOI)
    Semmelweis University authors: Müller, Dalma,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    174.
    Protein Expression in Metastatic Melanoma and the Link to Disease Presentation in a Range of Tumor Phenotypes
    Kim, Y;Gil, J;Pla, I;Sanchez, A;Betancourt, LH;Lee, B;Appelqvist, R;Ingvar, C;Lundgren, L;Olsson, H;Baldetorp, B;Kwon, HJ;Oskolás, H;Rezeli, M;Doma, V;Kárpáti, S;Szasz, AM;Németh, IB;Malm, J;Marko-Varga, G
    Q1
    CANCERS
    2020.
    DOI:10.3390/cancers12030767 (Copy DOI)
    175.
    Clinical and Immunologic Characteristics of Colorectal Cancer Tumors Expressing LY6G6D
    García, AS;Pedregal, M;Paniagua-Herranz, L;Diaz-Tejeiro, C;Nieto-Jiménez, C;Segura, PP;Munkacsy, G;Gyorffy, B;Calvo, E;Moreno, V;Ocaña, A
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms25105345 (Copy DOI)
    176.
    Understanding the Preclinical Efficacy of Antibody-Drug Conjugates
    Díaz-Tejeiro, C;de Sá, AL;Poyatos-Racionero, E;Ballestín, P;Bartolomé, J;Calvo, E;Moreno, V;Moris, F;Pérez-Segura, P;Gyorffy, B;Pandiella, A;Ocaña, A
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms252312875 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    177.
    Comprehensive analysis of differentially expressed miRNAs in hepatocellular carcinoma: Prognostic, predictive significance and pathway insights
    Smith, K;Beach, D;Silva, R;Balazs, G;Salani, F;Crea, F
    Q1
    PLOS ONE
    2024.
    DOI:10.1371/journal.pone.0296198 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    178.
    High iASPP (PPP1R13L) expression is an independent predictor of adverse clinical outcome in acute myeloid leukemia (AML)
    Saipi, MB;Ruiba, A;Schittenhelm, MM;Blumenstock, G;Gyorffy, B;Fazio, S;Hafner, M;Ahrens, AL;Aldinger, L;Aellig, V;Kavelaars, FG;Nombela-Arrieta, C;Fend, F;Valk, PJM;Christoph, D;Kampa-Schittenhelm, KM
    D1
    CELL DEATH & DISEASE
    2024.
    DOI:10.1038/s41419-024-07190-8 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    179.
    REST-dependent glioma progression occurs independently of the repression of the long non-coding RNA HAR1A
    Waters, E;Pucci, P;Rahman, R;Yatsyshyna, AP;Porter, H;Hirst, M;Gromnicova, R;Kraev, I;Mongiardini, V;Grimaldi, B;Golding, J;Fillmore, HL;Gyorffy, B;Gangadharannambiar, P;Velanis, CN;Heath, CJ;Crea, F
    Q1
    PLOS ONE
    2024.
    DOI:10.1371/journal.pone.0312237 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    180.
    Outcomes of Vacuum-Assisted Closure in Patients with Empyema Thoracis: A 10-year Experience
    Sziklavari, Zsolt; Hammoudeh, Sameer; Petrone, Ana-Maria; Stange, Sebastian; Orban, Karoly; Fekete, Janos Tibor; Hofmann, Hans-Stefan;
    D1
    ANNALS OF THORACIC SURGERY 0003-4975 1552-6259
    2024.
    DOI:10.1016/j.athoracsur.2024.08.003 (Copy DOI)
    Semmelweis University authors: Fekete, János Tibor,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    181.
    A unified platform enabling biomarker ranking and validation for 1562 drugs using transcriptomic data of 1250 cancer cell lines
    Fekete, JT;Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2022.
    DOI:10.1016/j.csbj.2022.06.007 (Copy DOI)
    182.
    Extensive proteome and functional genomic profiling of variability between genetically identical human B-lymphoblastoid cells
    Laczik, M;Erdos, E;Ozgyin, L;Hevessy, Z;Csosz, E;Kalló, G;Nagy, T;Barta, E;Póliska, S;Szatmári, I;Bálint, BL
    D1
    SCIENTIFIC DATA
    2022.
    DOI:10.1038/s41597-022-01871-9 (Copy DOI)
    Semmelweis University authors: Bálint, Bálint László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    183.
    In-depth proteomic analysis reveals unique subtype-specific signatures in human small-cell lung cancer
    Szeitz, B;Megyesfalvi, Z;Woldmar, N;Valkó, Z;Schwendenwein, A;Bárány, N;Paku, S;László, V;Kiss, H;Bugyik, E;Lang, C;Szász, AM;Pizzatti, L;Bogos, K;Hoda, MA;Hoetzenecker, K;Marko-Varga, G;Horvatovich, P;Döme, B;Schelch, K;Rezeli, M
    D1
    CLINICAL AND TRANSLATIONAL MEDICINE
    2022.
    DOI:10.1002/ctm2.1060 (Copy DOI)
    184.
    Mitochondrial dysfunction and immune suppression in BRAF V600E-mutated metastatic melanoma
    de Almeida, NP;Jánosi, AJ;Hong, RY;Rajeh, A;Nogueira, F;Szadai, L;Szeitz, B;Parada, IP;Doma, V;Woldmar, N;Guedes, J;Ujfaludi, Z;Bartha, A;Kim, Y;Welinder, C;Baldetorp, B;Kemény, LV;Pahi, Z;Wan, GH;Nguyen, N;Pankotai, T;Gyorffy, B;Pawlowski, K;Horvatovich, P;Szasz, AM;Sanchez, A;Kuras, M;Murillo, JR;Betancourt, L;Domont, GB;Semenov, YR;Yu, KH;Kwon, HJ;Németh, IB;Fenyo, D;Wieslander, E;Marko-Varga, G;Gil, J
    D1
    CLINICAL AND TRANSLATIONAL MEDICINE
    2024.
    DOI:10.1002/ctm2.1773 (Copy DOI)
    185.
    The human melanoma proteome atlas-Defining the molecular pathology
    Betancourt, LH;Gil, J;Kim, Y;Doma, V;Çakir, U;Sanchez, A;Murillo, JR;Kuras, M;Parada, IP;Sugihara, Y;Appelqvist, R;Wieslander, E;Welinder, C;Velasquez, E;de Almeida, NP;Woldmar, N;Marko-Varga, M;Pawlowski, K;Eriksson, J;Szeitz, B;Baldetorp, B;Ingvar, C;Olsson, H;Lundgren, L;Lindberg, H;Oskolas, H;Lee, B;Berge, E;Sjögren, M;Eriksson, C;Kim, D;Kwon, HJ;Knudsen, B;Rezeli, M;Hong, RY;Horvatovich, P;Miliotis, T;Nishimura, T;Kato, H;Steinfelder, E;Oppermann, M;Miller, K;Florindi, F;Zhou, QM;Domont, ...
    Q4
    CLINICAL AND TRANSLATIONAL MEDICINE
    2021.
    DOI:10.1002/ctm2.473 (Copy DOI)
    186.
    The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome
    Betancourt, LH;Gil, J;Sanchez, A;Doma, V;Kuras, M;Murillo, JR;Velasquez, E;Çakir, U;Kim, Y;Sugihara, Y;Parada, IP;Szeitz, B;Appelqvist, R;Wieslander, E;Welinder, C;de Almeida, NP;Woldmar, N;Marko-Varga, M;Eriksson, J;Pawlowski, K;Baldetorp, B;Ingvar, C;Olsson, H;Lundgren, L;Lindberg, H;Oskolas, H;Lee, B;Berge, E;Sjögren, M;Eriksson, C;Kim, D;Kwon, HJ;Knudsen, B;Rezeli, M;Malm, J;Hong, RY;Horvath, P;Szász, AM;Tímár, J;Kárpáti, S;Horvatovich, P;Miliotis, T;Nishimura, T;Kato, H;Steinfelder, ...
    Q4
    CLINICAL AND TRANSLATIONAL MEDICINE
    2021.
    DOI:10.1002/ctm2.451 (Copy DOI)
    187.
    Az online trollok és trollkodás pszichológiájának vizsgálata Magyarországon: Egy nemzetközi, internet-alapú keresztmetszeti kérdőíves vizsgálat részeredményei
    Vass, Edit; Csukly, Gábor; March, Evita; Simon, Viktória; Kovács, Szonja A; Andróczi, Júlia; Farkas, Kinga; Vajsz, Kornél; Votinov, Mikhail; Habel, Ute; Kwan, Virginia S Y; Kante, Mahamadou; Alfasi, Yitshak; Rath, Rakshi; Balaban, Hale Ögel; Banyoczki, Bence; Békási, Sándor; Pineda, David; Simon, Lajos;
    Q4
    PSYCHIATRIA HUNGARICA 0237-7896
    2024.
    188.
    Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA.
    Abbosh, Christopher; Frankell, Alexander M; Harrison, Thomas; Kisistok, Judit; Garnett, Aaron; Johnson, Laura; Veeriah, Selvaraju; Moreau, Mike; Chesh, Adrian; Chaunzwa, Tafadzwa L; Weiss, Jakob; Schroeder, Morgan R; Ward, Sophia; Grigoriadis, Kristiana; Shahpurwalla, Aamir; Litchfield, Kevin; Puttick, Clare; Biswas, Dhruva; Karasaki, Takahiro; Black, James R M; Martínez-Ruiz, Carlos; Bakir, Maise Al; Pich, Oriol; Watkins, Thomas B K; Lim, Emilia L; Huebner, Ariana; Moore, David A; Godin-Heyman...
    D1
    NATURE 0028-0836 1476-4687
    2023.
    DOI:10.1038/s41586-023-05776-4 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    189.
    Body composition and lung cancer-associated cachexia in TRACERx.
    Al-Sawaf, Othman; Weiss, Jakob; Skrzypski, Marcin; Lam, Jie Min; Karasaki, Takahiro; Zambrana, Francisco; Kidd, Andrew C; Frankell, Alexander M; Watkins, Thomas B K; Martínez-Ruiz, Carlos; Puttick, Clare; Black, James R M; Huebner, Ariana; Bakir, Maise Al; Sokač, Mateo; Collins, Susie; Veeriah, Selvaraju; Magno, Neil; Naceur-Lombardelli, Cristina; Prymas, Paulina; Toncheva, Antonia; Ward, Sophia; Jayanth, Nick; Salgado, Roberto; Bridge, Christopher P; Christiani, David C; Mak, Raymond H; Bay, ...
    D1
    NATURE MEDICINE 1078-8956 1546-170X
    2023.
    DOI:10.1038/s41591-023-02232-8 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    190.
    Lung adenocarcinoma promotion by air pollutants.
    Hill, William; Lim, Emilia L; Weeden, Clare E; Lee, Claudia; Augustine, Marcellus; Chen, Kezhong; Kuan, Feng-Che; Marongiu, Fabio; Evans, Edward J; Moore, David A; Rodrigues, Felipe S; Pich, Oriol; Bakker, Bjorn; Cha, Hongui; Myers, Renelle; van Maldegem, Febe; Boumelha, Jesse; Veeriah, Selvaraju; Rowan, Andrew; Naceur-Lombardelli, Cristina; Karasaki, Takahiro; Sivakumar, Monica; De, Swapnanil; Caswell, Deborah R; Nagano, Ai; Black, James R M; Martínez-Ruiz, Carlos; Ryu, Min Hyung; Huff, Ryan D...
    D1
    NATURE 0028-0836 1476-4687
    2023.
    DOI:10.1038/s41586-023-05874-3 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    191.
    Evolutionary characterization of lung adenocarcinoma morphology in TRACERx.
    Karasaki, Takahiro; Moore, David A; Veeriah, Selvaraju; Naceur-Lombardelli, Cristina; Toncheva, Antonia; Magno, Neil; Ward, Sophia; Bakir, Maise Al; Watkins, Thomas B K; Grigoriadis, Kristiana; Huebner, Ariana; Hill, Mark S; Frankell, Alexander M; Abbosh, Christopher; Puttick, Clare; Zhai, Haoran; Gimeno-Valiente, Francisco; Saghafinia, Sadegh; Kanu, Nnennaya; Dietzen, Michelle; Pich, Oriol; Lim, Emilia L; Martínez-Ruiz, Carlos; Black, James R M; Biswas, Dhruva; Campbell, Brittany B; Lee, Claud...
    D1
    NATURE MEDICINE 1078-8956 1546-170X
    2023.
    DOI:10.1038/s41591-023-02230-w (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    192.
    Genomic-transcriptomic evolution in lung cancer and metastasis.
    Martínez-Ruiz, Carlos; Black, James R M; Puttick, Clare; Hill, Mark S; Demeulemeester, Jonas; Larose Cadieux, Elizabeth; Thol, Kerstin; Jones, Thomas P; Veeriah, Selvaraju; Naceur-Lombardelli, Cristina; Toncheva, Antonia; Prymas, Paulina; Rowan, Andrew; Ward, Sophia; Cubitt, Laura; Athanasopoulou, Foteini; Pich, Oriol; Karasaki, Takahiro; Moore, David A; Salgado, Roberto; Colliver, Emma; Castignani, Carla; Dietzen, Michelle; Huebner, Ariana; Al Bakir, Maise; Tanić, Miljana; Watkins, Thomas B K...
    D1
    NATURE 0028-0836 1476-4687
    2023.
    DOI:10.1038/s41586-023-05706-4 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    193.
    A gyulladáshoz köthető jelátviteli utak fokozott aktivitása antraciklin-paklitaxel rezisztens emlőkarcinómákban
    Menyhárt, O; Fekete, János Tibor; Győrffy, Balázs;
    Q4
    MAGYAR ONKOLÓGIA 0025-0244 2060-0399
    2023.
    194.
    Antibodies against endogenous retroviruses promote lung cancer immunotherapy.
    Ng, Kevin W; Boumelha, Jesse; Enfield, Katey S S; Almagro, Jorge; Cha, Hongui; Pich, Oriol; Karasaki, Takahiro; Moore, David A; Salgado, Roberto; Sivakumar, Monica; Young, George; Molina-Arcas, Miriam; de Carné Trécesson, Sophie; Anastasiou, Panayiotis; Fendler, Annika; Au, Lewis; Shepherd, Scott T C; Martínez-Ruiz, Carlos; Puttick, Clare; Black, James R M; Watkins, Thomas B K; Kim, Hyemin; Shim, Seohee; Faulkner, Nikhil; Attig, Jan; Veeriah, Selvaraju; Magno, Neil; Ward, Sophia; Frankell, Al...
    D1
    NATURE 0028-0836 1476-4687
    2023.
    DOI:10.1038/s41586-023-05771-9 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    195.
    Az I-es típusú interferon lehetséges szerepe a bőrmelanóma genomikai progressziójában
    Vízkeleti, Laura; Ladányi, Andrea; Papp, Orsolya; Doma, Viktória; Kárpáti, Sarolta; Rásó, Erzsébet; Barbai, Tamás; Tímár, József;
    Q4
    MAGYAR ONKOLÓGIA 0025-0244 2060-0399
    2023.

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