Semmelweis Publications
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    • Bioinformatika Tanszék - Papers cited in Web of Science database (2020-2025)

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    SU Authorship:
    Number of publications: 160
    1.
    Transcriptome-level discovery of survival-associated biomarkers and therapy targets in non-small-cell lung cancer
    Gyorffy, B
    D1
    BRITISH JOURNAL OF PHARMACOLOGY
    2024.
    DOI:10.1111/bph.16257 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    2.
    Discovery and ranking of the most robust prognostic biomarkers in serous ovarian cancer
    Gyorffy, B
    D1
    GEROSCIENCE
    2023.
    DOI:10.1007/s11357-023-00742-4 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    3.
    Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
    Lánczky, A;Gyorffy, B
    D1
    JOURNAL OF MEDICAL INTERNET RESEARCH
    2021.
    DOI:10.2196/27633 (Copy DOI)
    Semmelweis University authors: Lánczky, András, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    4.
    Integrated analysis of public datasets for the discovery and validation of survival-associated genes in solid tumors
    Gyorffy, B
    D1
    INNOVATION
    2024.
    DOI:10.1016/j.xinn.2024.100625 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    5.
    TNMplot.com: A Web Tool for the Comparison of Gene Expression in Normal, Tumor and Metastatic Tissues
    Bartha, A;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2021.
    DOI:10.3390/ijms22052622 (Copy DOI)
    6.
    Survival analysis across the entire transcriptome identifies biomarkers with the highest prognostic power in breast cancer
    Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2021.
    DOI:10.1016/j.csbj.2021.07.014 (Copy DOI)
    7.
    Pancancer survival analysis of cancer hallmark genes
    Nagy, A;Munkácsy, G;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2021.
    DOI:10.1038/s41598-021-84787-5 (Copy DOI)
    Semmelweis University authors: Nagy, Ádám, Munkácsy, Gyöngyi, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    8.
    Autophagy and cancer drug resistance in dialogue: Pre-clinical and clinical evidence
    Qin, Y;Ashrafizadeh, M;Mongiardini, V;Grimaldi, B;Crea, F;Rietdorf, K;Gyorffy, B;Klionsky, DJ;Ren, J;Zhang, W;Zhang, XB
    D1
    CANCER LETTERS
    2023.
    DOI:10.1016/j.canlet.2023.216307 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    9.
    Transient loss of Polycomb components induces an epigenetic cancer fate
    Parreno, V;Loubiere, V;Schuettengruber, B;Fritsch, L;Rawal, CC;Erokhin, M;Gyorffy, B;Normanno, D;Di Stefano, M;Moreaux, J;Butova, NL;Chiolo, I;Chetverina, D;Martinez, AM;Cavalli, G
    D1
    NATURE
    2024.
    DOI:10.1038/s41586-024-07328-w (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    10.
    The evolution of lung cancer and impact of subclonal selection in TRACERx
    Frankell, AM;Dietzen, M;Al Bakir, M;Lim, EL;Karasaki, T;Ward, S;Veeriah, S;Colliver, E;Huebner, A;Bunkum, A;Hill, MS;Grigoriadis, K;Moore, DA;Black, JRM;Liu, WK;Thol, K;Pich, O;Watkins, TBK;Naceur-Lombardelli, C;Cook, DE;Salgado, R;Wilson, GA;Bailey, C;Angelova, M;Bentham, R;Martínez-Ruiz, C;Abbosh, C;Nicholson, AG;Le Quesne, J;Biswas, D;Rosenthal, R;Puttick, C;Hessey, S;Lee, C;Prymas, P;Toncheva, A;Smith, J;Xing, W;Nicod, J;Price, G;Kerr, KM;Naidu, B;Middleton, G;Blyth, KG;Fennell, DA;Forster,...
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-05783-5 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    11.
    ELM-the Eukaryotic Linear Motif resource-2024 update
    Kumar, M;Michael, S;Alvarado-Valverde, J;Zeke, A;Lazar, T;Glavina, J;Nagy-Kanta, E;Mac Donagh, J;Kalman, ZE;Pascarelli, S;Palopoli, N;Dobson, L;Suarez, CF;Van Roey, K;Krystkowiak, I;Griffin, JE;Nagpal, A;Bhardwaj, R;Diella, F;Mészáros, B;Dean, K;Davey, NE;Pancsa, R;Chemes, LB;Gibson, TJ
    D1
    NUCLEIC ACIDS RESEARCH
    2024.
    DOI:10.1093/nar/gkad1058 (Copy DOI)
    Semmelweis University authors: Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    12.
    Predictive biomarkers of immunotherapy response with pharmacological applications in solid tumors
    Kovács, SA;Fekete, JT;Gyorffy, B
    D1
    ACTA PHARMACOLOGICA SINICA
    2023.
    DOI:10.1038/s41401-023-01079-6 (Copy DOI)
    13.
    Spatial predictors of immunotherapy response in triple-negative breast cancer
    Wang, XQ;Danenberg, E;Huang, CS;Egle, D;Callari, M;Bermejo, B;Dugo, M;Zamagni, C;Thill, M;Anton, A;Zambelli, S;Russo, S;Ciruelos, EM;Greil, R;Györffy, B;Semiglazov, V;Colleoni, M;Kelly, CM;Mariani, G;Del Mastro, L;Biasi, O;Seitz, RS;Valagussa, P;Viale, G;Gianni, L;Bianchini, G;Ali, HR
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-06498-3 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    14.
    The evolution of non-small cell lung cancer metastases in TRACERx
    Al Bakir, M;Huebner, A;Martínez-Ruiz, C;Grigoriadis, K;Watkins, TBK;Pich, O;Moore, DA;Veeriah, S;Ward, S;Laycock, J;Johnson, D;Rowan, A;Razaq, M;Akther, M;Naceur-Lombardelli, C;Prymas, P;Toncheva, A;Hessey, S;Dietzen, M;Colliver, E;Frankell, AM;Bunkum, A;Lim, EL;Karasaki, T;Abbosh, C;Hiley, CT;Hill, MS;Cook, DE;Wilson, GA;Salgado, R;Nye, E;Stone, RK;Fennell, DA;Price, G;Kerr, KM;Naidu, B;Middleton, G;Summers, Y;Lindsay, CR;Blackhall, FH;Cave, J;Blyth, KG;Nair, A;Ahmed, A;Taylor, MN;Procter, AJ;...
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-05729-x (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    15.
    Microenvironmental ammonia enhances T cell exhaustion in colorectal cancer
    Bell, HN;Huber, AK;Singhal, R;Korimerla, N;Rebernick, RJ;Kumar, R;El-derany, MO;Sajjakulnukit, P;Das, NK;Kerk, SA;Solanki, S;James, JG;Kim, D;Zhang, L;Chen, BD;Mehra, R;Frankel, TL;Gyorffy, B;Fearon, ER;di Magliano, MP;Gonzalez, FJ;Banerjee, R;Wahl, DR;Lyssiotis, CA;Green, M;Shah, YM
    D1
    CELL METABOLISM
    2023.
    DOI:10.1016/j.cmet.2022.11.013 (Copy DOI)
    16.
    Different mutations in SARS-CoV-2 associate with severe and mild outcome
    Nagy, A;Pongor, S;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
    2021.
    DOI:10.1016/j.ijantimicag.2020.106272 (Copy DOI)
    Semmelweis University authors: Nagy, Ádám, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    17.
    Long-term Multimodal Recording Reveals Epigenetic Adaptation Routes in Dormant Breast Cancer Cells
    Rosano, D;Sofyali, E;Dhiman, H;Ghirardi, C;Ivanoiu, D;Heide, T;Vingiani, A;Bertolotti, A;Pruneri, G;Canale, E;Dewhurst, HF;Saha, D;Slaven, N;Barozzi, I;Li, T;Zemlyanskiy, G;Phillips, H;James, C;Gyorffy, B;Lynn, C;Cresswell, GD;Rehman, F;Noberini, R;Bonaldi, T;Sottoriva, A;Magnani, L
    D1
    CANCER DISCOVERY
    2024.
    DOI:10.1158/2159-8290.CD-23-1161 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    18.
    Prognostic significance of a signature based on senescence-related genes in colorectal cancer
    Ungvari, Z;Ungvari, A;Bianchini, G;Gyorffy, B
    D1
    GEROSCIENCE
    2024.
    DOI:10.1007/s11357-024-01164-6 (Copy DOI)
    19.
    Mediator kinase inhibition reverses castration resistance of advanced cancer
    Li, J;Hilimire, TA;Liu, YY;Wang, LL;Liang, JX;Gyorffy, B;Sikirzhytski, V;Ji, H;Zhang, L;Cheng, C;Ding, XK;Kerr, KR;Dowling, CE;Chumanevich, AA;Mack, ZT;Schools, GP;Lim, CU;Ellis, L;Zi, XL;Porter, DC;Broude, EV;McInnes, C;Wilding, G;Lilly, MB;Roninson, IB;Chen, MQ
    D1
    JOURNAL OF CLINICAL INVESTIGATION
    2024.
    DOI:10.1172/JCI176709 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    20.
    Evolutionary characterization of lung adenocarcinoma morphology in TRACERx
    Karasaki, T;Moore, DA;Veeriah, S;Naceur-Lombardelli, C;Toncheva, A;Magno, N;Ward, S;Al Bakir, M;Watkins, TBK;Grigoriadis, K;Huebner, A;Hill, MS;Frankell, AM;Abbosh, C;Puttick, C;Zhai, HR;Gimeno-Valiente, F;Saghafinia, S;Kanu, N;Dietzen, M;Pich, O;Lim, EL;Martínez-Ruiz, C;Black, JRM;Biswas, D;Campbell, BB;Lee, C;Colliver, E;Enfield, KSS;Hessey, S;Hiley, CT;Zaccaria, S;Litchfield, K;Birkbak, NJ;Cadieux, EL;Demeulemeester, J;Van Loo, P;Adusumilli, PS;Tan, KS;Cheema, W;Sanchez-Vega, F;Jones, DR;Rek...
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02230-w (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    21.
    Body composition and lung cancer-associated cachexia in TRACERx
    Al-Sawaf, O;Weiss, J;Skrzypski, M;Lam, JM;Karasaki, T;Zambrana, F;Kidd, AC;Frankell, AM;Watkins, TBK;Martínez-Ruiz, C;Puttick, C;Black, JRM;Huebner, A;Al Bakir, M;Sokac, M;Collins, S;Veeriah, S;Magno, N;Naceur-Lombardelli, C;Prymas, P;Toncheva, A;Ward, S;Jayanth, N;Salgado, R;Bridge, CP;Christiani, DC;Mak, RH;Bay, C;Rosenthal, M;Sattar, N;Welsh, P;Liu, Y;Perrimon, N;Popuri, K;Beg, MF;McGranahan, N;Hackshaw, A;Breen, DM;O'Rahilly, S;Birkbak, NJ;Aerts, HJWL;Jamal-Hanjani, M;Swanton, C;Lester, JF;...
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02232-8 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    22.
    Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis
    Menyhárt, O;Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2021.
    DOI:10.1016/j.csbj.2021.01.009 (Copy DOI)
    23.
    ALK peptide vaccination restores the immunogenicity of ALK-rearranged non-small cell lung cancer
    Mota, I;Patrucco, E;Mastini, C;Mahadevan, NR;Thai, TC;Bergaggio, E;Cheong, TC;Leonardi, G;Karaca-Atabay, E;Campisi, M;Poggio, T;Menotti, M;Ambrogio, C;Longo, DL;Klaeger, S;Keshishian, H;Sztupinszki, ZM;Szallasi, Z;Keskin, DB;Duke-Cohan, JS;Reinhold, B;Carr, SA;Wu, CJ;Moynihan, KD;Irvine, DJ;Barbie, DA;Reinherz, EL;Voena, C;Awad, MM;Blasco, RB;Chiarle, R
    D1
    NATURE CANCER
    2023.
    DOI:10.1038/s43018-023-00591-2 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    24.
    Analysis of a large cohort of pancreatic cancer transcriptomic profiles to reveal the strongest prognostic factors
    Posta, M;Gyorffy, B
    D1
    CTS-CLINICAL AND TRANSLATIONAL SCIENCE
    2023.
    DOI:10.1111/cts.13563 (Copy DOI)
    25.
    DNA methylation-based diagnostic, prognostic, and predictive biomarkers in colorectal cancer
    Müller, D;Gyorffy, B
    D1
    BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
    2022.
    DOI:10.1016/j.bbcan.2022.188722 (Copy DOI)
    Semmelweis University authors: Müller, Dalma, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    26.
    Predictive biomarkers of platinum and taxane resistance using the transcriptomic data of 1816 ovarian cancer patients
    Fekete, JT;Osz, A;Pete, I;Nagy, GR;Vereczkey, I;Gyorffy, B
    D1
    GYNECOLOGIC ONCOLOGY
    2020.
    DOI:10.1016/j.ygyno.2020.01.006 (Copy DOI)
    27.
    MultipleTesting.com: A tool for life science researchers for multiple hypothesis testing correction
    Menyhart, O;Weltz, B;Gyorffy, B
    Q1
    PLOS ONE
    2021.
    DOI:10.1371/journal.pone.0245824 (Copy DOI)
    28.
    muTarget: A platform linking gene expression changes and mutation status in solid tumors
    Nagy, A;Gyorffy, B
    Q1
    INTERNATIONAL JOURNAL OF CANCER
    2021.
    DOI:10.1002/ijc.33283 (Copy DOI)
    29.
    Liquid biopsy epigenomic profiling for cancer subtyping
    Baca, SC;Seo, JH;Davidsohn, MP;Fortunato, B;Semaan, K;Sotudian, S;Lakshminarayanan, G;Diossy, M;Qiu, XT;El Zarif, T;Savignano, H;Canniff, J;Madueke, I;Saliby, RM;Zhang, ZW;Li, R;Jiang, YJ;Taing, L;Awad, M;Chau, CH;Decaprio, JA;Figg, WD;Greten, TF;Hata, AN;Hodi, FS;Hughes, ME;Ligon, KL;Lin, NY;Ng, K;Oser, MG;Meador, C;Parsons, HA;Pomerantz, MM;Rajan, A;Ritz, J;Thakuria, M;Tolaney, SM;Wen, PY;Long, HY;Berchuck, JE;Szallasi, Z;Choueiri, TK;Freedman, ML
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02605-z (Copy DOI)
    30.
    Research funding: past performance is a stronger predictor of future scientific output than reviewer scores
    Gyorffy, B;Herman, P;Szabó, I
    D1
    JOURNAL OF INFORMETRICS
    2020.
    DOI:10.1016/j.joi.2020.101050 (Copy DOI)
    31.
    Modulation of the Estrogen/erbB2 Receptors Cross-talk by CDK4/6 Inhibition Triggers Sustained Senescence in Estrogen Receptor- and ErbB2-positive Breast Cancer
    Viganò, L;Locatelli, A;Ulisse, A;Galbardi, B;Dugo, M;Tosi, D;Tacchetti, C;Daniele, T;Gyorffy, B;Sica, L;Macchini, M;Zambetti, M;Zambelli, S;Bianchini, G;Gianni, L
    D1
    CLINICAL CANCER RESEARCH
    2022.
    DOI:10.1158/1078-0432.CCR-21-3185 (Copy DOI)
    32.
    The artificial intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma
    Pan, XX;Abduljabbar, K;Coelho-Lima, J;Grapa, AI;Zhang, HY;Cheung, AHK;Baena, J;Karasaki, T;Wilson, CR;Sereno, M;Veeriah, S;Aitken, SJ;Hackshaw, A;Nicholson, AG;Jamal-Hanjani, M;Swanton, C;Jamal-Hanjani, M;Zhang, H;AbdulJabbar, K;Pan, X;Yuan, Y;Hackshaw, A;Le Quesne, J;Veeriah, S;Karasaki, T;Janes, SM;Hacker, AM;Sharp, A;Smith, S;Dhanda, HK;Chan, KTY;Pilotti, C;Leslie, R;Grapa, AI;Chuter, D;Mackenzie, M;Chee, S;Alzetani, A;Lim, E;De Sousa, P;Jordan, S;Rice, A;Raubenheimer, H;Bhayani, H;Ambrose, L...
    D1
    NATURE CANCER
    2024.
    DOI:10.1038/s43018-023-00694-w (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    33.
    A Functional Survey of the Regulatory Landscape of Estrogen Receptor-Positive Breast Cancer Evolution
    Barozzi, I;Slaven, N;Canale, E;Lopes, R;Barbosa, IAM;Bleu, M;Ivanoiu, D;Pacini, C;Mensa, E;Chambers, A;Bravaccini, S;Ravaioli, S;Gyorffy, B;Dieci, MV;Pruneri, G;Galli, GG;Magnani, L
    D1
    CANCER DISCOVERY
    2024.
    DOI:10.1158/2159-8290.CD-23-1157 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    34.
    Adherence to the Mediterranean diet and its protective effects against colorectal cancer: a meta-analysis of 26 studies with 2,217,404 participants
    Ungvari, Z;Fekete, M;Fekete, JT;Grosso, G;Ungvari, A;Gyorffy, B
    D1
    GEROSCIENCE
    2024.
    DOI:10.1007/s11357-024-01296-9 (Copy DOI)
    35.
    The cell cycle-related genes RHAMM, AURKA, TPX2, PLK1, and PLK4 are associated with the poor prognosis of breast cancer patients
    Kahl, I;Mense, J;Finke, C;Boller, AL;Lorber, C;Gyorffy, B;Greve, B;Gotte, M;Espinoza-Sanchez, NA
    Q2
    JOURNAL OF CELLULAR BIOCHEMISTRY
    2022.
    DOI:10.1002/jcb.30205 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    36.
    Oncogene-mediated metabolic gene signature predicts breast cancer outcome
    Aslan, M;Hsu, EC;Garcia-Marques, FJ;Bermudez, A;Liu, SQ;Shen, M;West, M;Zhang, CA;Rice, MA;Brooks, JD;West, R;Pitteri, SJ;Gyorffy, B;Stoyanova, T
    D1
    NPJ BREAST CANCER
    2021.
    DOI:10.1038/s41523-021-00341-6 (Copy DOI)
    37.
    UniTmp: unified resources for transmembrane proteins
    Dobson, L;Gerdán, C;Tusnády, S;Szekeres, L;Kuffa, K;Langó, T;Zeke, A;Tusnády, GE
    D1
    NUCLEIC ACIDS RESEARCH
    2024.
    DOI:10.1093/nar/gkad897 (Copy DOI)
    Semmelweis University authors: Dobson, László, Tusnády, Gábor,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    38.
    Dietary approaches for exploiting metabolic vulnerabilities in cancer
    Menyhárt, O;Gyorffy, B
    D1
    BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
    2024.
    DOI:10.1016/j.bbcan.2023.189062 (Copy DOI)
    Semmelweis University authors: Menyhart, Otilia, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    39.
    BRD4 regulates key transcription factors that drive epithelial-mesenchymal transition in castration-resistant prostate cancer
    Shafran, JS;Jafari, N;Casey, AN;Gyorffy, B;Denis, G
    D1
    PROSTATE CANCER AND PROSTATIC DISEASES
    2021.
    DOI:10.1038/s41391-020-0246-y (Copy DOI)
    40.
    Survival analysis in breast cancer using proteomic data from four independent datasets
    Osz, A;Lánczky, A;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2021.
    DOI:10.1038/s41598-021-96340-5 (Copy DOI)
    41.
    Glucocorticoid receptor triggers a reversible drug-tolerant dormancy state with acquired therapeutic vulnerabilities in lung cancer
    Prekovic, S;Schuurman, K;Mayayo-Peralta, I;Manjón, AG;Buijs, M;Yavuz, S;Wellenstein, MD;Barrera, A;Monkhorst, K;Huber, A;Morris, B;Lieftink, C;Chalkiadakis, T;Alkan, F;Silva, J;Gyorffy, B;Hoekman, L;van den Broek, B;Teunissen, H;Debets, DO;Severson, T;Jonkers, J;Reddy, T;de Visser, KE;Faller, W;Beijersbergen, R;Altelaar, M;de Wit, E;Medema, R;Zwart, W
    D1
    NATURE COMMUNICATIONS
    2021.
    DOI:10.1038/s41467-021-24537-3 (Copy DOI)
    42.
    Contingent parental responses are naturally associated with zebra finch song learning
    Carouso-Peck, S;Menyhart, O;DeVoogd, TJ;Goldstein, MH
    D1
    ANIMAL BEHAVIOUR
    2020.
    DOI:10.1016/j.anbehav.2020.04.019 (Copy DOI)
    43.
    Linear motifs regulating protein secretion, sorting and autophagy in Leishmania parasites are diverged with respect to their host equivalents
    Zeke, A;Gibson, TJ;Dobson, L
    D1
    PLOS COMPUTATIONAL BIOLOGY
    2024.
    DOI:10.1371/journal.pcbi.1011902 (Copy DOI)
    Semmelweis University authors: Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    44.
    The m6A writer RBM15 drives the growth of triple-negative breast cancer cells through the stimulation of serine and glycine metabolism
    Park, SH;Ju, JS;Woo, H;Yun, HJ;Lee, SB;Kim, SH;Gyorffy, B;Kim, EJ;Kim, H;Han, HD;Eyun, SI;Lee, JH;Park, YY
    D1
    EXPERIMENTAL AND MOLECULAR MEDICINE
    2024.
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    SETD3 acts as a prognostic marker in breast cancer patients and modulates the viability and invasion of breast cancer cells
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    Bellanger, A;Le, DT;Vendrell, J;Wierinckx, A;Pongor, LS;Solassol, J;Lachuer, J;Clezardin, P;Gyorffy, B;Cohen, PA
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    FRONTIERS IN ONCOLOGY
    2021.
    DOI:10.3389/fonc.2021.647269 (Copy DOI)
    Semmelweis University authors: Pongor, Lőrinc, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    139.
    Deep Proteomic Analysis on Biobanked Paraffine-Archived Melanoma with Prognostic/Predictive Biomarker Read-Out
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    CANCERS
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    140.
    Currently favored sampling practices for tumor sequencing can produce optimal results in the clinical setting
    Pongor, LS;Munkácsy, G;Vereczkey, I;Pete, I;Gyorffy, B
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    141.
    Comparison of scientometric achievements at PhD and scientific output ten years later for 4,790 academic researchers
    Munkácsy, G;Herman, P;Györffy, B
    Q1
    PLOS ONE
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    142.
    The prognostic significance of FOXC2 gene expression in cancer: A comprehensive analysis of RNA-seq data from the cancer genome atlas
    Hargadon, KM;Gyorffy, B;Strong, EW
    Q3
    CANCER GENETICS
    2021.
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    143.
    Deconstructing Immune Cell Infiltration in Human Colorectal Cancer: A Systematic Spatiotemporal Evaluation
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    Q2
    GENES
    2022.
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    144.
    Investigating the Prognostic Relevance of Tumor Immune Microenvironment and Immune Gene Assembly in Breast Carcinoma Subtypes
    Szeitz, B;Pipek, O;Kulka, J;Szundi, C;Rusz, O;Tokés, T;Szász, AM;Kovács, KA;Pesti, A;Ben Arie, TB;Gángó, A;Fülöp, Z;Drágus, E;Vári-Kakas, SA;Tokés, AM
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    CANCERS
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    145.
    Genomic mapping of copy number variations influencing immune response in breast cancer
    López-Cade, I;García-Barberán, V;Morafraile, EC;Díaz-Tejeiro, C;Saiz-Ladera, C;Sanvicente, A;Segura, PP;Pandiella, A;Gyorffy, B;Ocaña, A
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    FRONTIERS IN ONCOLOGY
    2022.
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    146.
    Genomic and transcriptional changes in IFNγ pathway genes are putative biomarkers of response to ipilimumab immunotherapy in melanoma patients
    Hargadon, K;Gyorffy, B;McGee, TJ
    Q2
    EXPERT REVIEW OF CLINICAL IMMUNOLOGY
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    147.
    RIP140 Represses Intestinal Paneth Cell Differentiation and Interplays with SOX9 Signaling in Colorectal Cancer
    Gleizes, A;Triki, M;Bonnet, S;Baccari, N;Jimenez-Dominguez, G;Covinhes, A;Pirot, N;Blache, P;Yuan, R;Gyorffy, B;Cavaillès, V;Lapierre, M
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    CANCERS
    2021.
    DOI:10.3390/cancers13133192 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    148.
    Effective synthesis, development and application of a highly fluorescent cyanine dye for antibody conjugation and microscopy imaging
    Kovács, DS;Kontra, B;Chiovini, B;Müller, D;Tóth, EZ;Abranyi-Balogh, P;Wittner, L;Várady, G;Turczel, G;Farkas, Ö;Owen, MC;Katona, G;Gyorffy, B;Keseru, GM;Mucsi, Z;Rózsa, BJ;Kovács, E
    Q2
    ORGANIC & BIOMOLECULAR CHEMISTRY
    2023.
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    149.
    DNA Polymerase Alpha Subunit B Is a Binding Protein for Erlotinib Resistance in Non-Small Cell Lung Cancer
    Kim, TY;Ji, ES;Lee, JY;Kim, JY;Yoo, JS;Szasz, AM;Dome, B;Marko-Varga, G;Kwon, HJ
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    150.
    Evaluating Individual Scientific Output Normalized to Publication Age and Academic Field Through the Scientometrics.org Project
    Gyorffy, B;Weltz, B;Munkácsy, G;Herman, P;Szabó, I
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    METHODOLOGY-EUROPEAN JOURNAL OF RESEARCH METHODS FOR THE BEHAVIORAL ANDSOCIAL SCIENCES
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    151.
    Proteotranscriptomic Discrimination of Tumor and Normal Tissues in Renal Cell Carcinoma
    Bartha, A;Darula, Z;Munkácsy, G;Klement, E;Nyirády, P;Gyorffy, B
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    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
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    152.
    Rewired Metabolism Caused by the Oncogenic Deregulation of MYC as an Attractive Therapeutic Target in Cancers
    Vizkeleti, L;Spisák, S
    Q1
    CELLS
    2023.
    DOI:10.3390/cells12131745 (Copy DOI)
    Semmelweis University authors: Vízkeleti, Laura,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    153.
    Association between CYP2B6 genetic variability and cyclophosphamide therapy in pediatric patients with neuroblastoma
    Mangó, K;Fekete, F;Kiss, AF;Erdos, R;Fekete, JT;Budi, T;Bruckner, E;Garami, M;Micsik, T;Monostory, K
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    SCIENTIFIC REPORTS
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    154.
    Transcriptomic Profiles of CD47 in Breast Tumors Predict Outcome and Are Associated with Immune Activation
    Noblejas-López, MD;Baliu-Piqué, M;Nieto-Jiménez, C;Cimas, FJ;Morafraile, EC;Pandiella, A;Corbi, AL;Gyorffy, B;Ocaña, A
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    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
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    155.
    Primary Founder Mutations in the PRKDC Gene Increase Tumor Mutation Load in Colorectal Cancer
    Pálinkás, HL;Pongor, L;Balajti, M;Nagy, A;Nagy, K;Békési, A;Bianchini, G;Vértessy, BG;Gyorffy, B
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    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
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    156.
    Protein Expression in Metastatic Melanoma and the Link to Disease Presentation in a Range of Tumor Phenotypes
    Kim, Y;Gil, J;Pla, I;Sanchez, A;Betancourt, LH;Lee, B;Appelqvist, R;Ingvar, C;Lundgren, L;Olsson, H;Baldetorp, B;Kwon, HJ;Oskolás, H;Rezeli, M;Doma, V;Kárpáti, S;Szasz, AM;Németh, IB;Malm, J;Marko-Varga, G
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    157.
    A unified platform enabling biomarker ranking and validation for 1562 drugs using transcriptomic data of 1250 cancer cell lines
    Fekete, JT;Gyorffy, B
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    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
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    158.
    In-depth proteomic analysis reveals unique subtype-specific signatures in human small-cell lung cancer
    Szeitz, B;Megyesfalvi, Z;Woldmar, N;Valkó, Z;Schwendenwein, A;Bárány, N;Paku, S;László, V;Kiss, H;Bugyik, E;Lang, C;Szász, AM;Pizzatti, L;Bogos, K;Hoda, MA;Hoetzenecker, K;Marko-Varga, G;Horvatovich, P;Döme, B;Schelch, K;Rezeli, M
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    CLINICAL AND TRANSLATIONAL MEDICINE
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    159.
    The human melanoma proteome atlas-Defining the molecular pathology
    Betancourt, LH;Gil, J;Kim, Y;Doma, V;Çakir, U;Sanchez, A;Murillo, JR;Kuras, M;Parada, IP;Sugihara, Y;Appelqvist, R;Wieslander, E;Welinder, C;Velasquez, E;de Almeida, NP;Woldmar, N;Marko-Varga, M;Pawlowski, K;Eriksson, J;Szeitz, B;Baldetorp, B;Ingvar, C;Olsson, H;Lundgren, L;Lindberg, H;Oskolas, H;Lee, B;Berge, E;Sjögren, M;Eriksson, C;Kim, D;Kwon, HJ;Knudsen, B;Rezeli, M;Hong, RY;Horvatovich, P;Miliotis, T;Nishimura, T;Kato, H;Steinfelder, E;Oppermann, M;Miller, K;Florindi, F;Zhou, QM;Domont, ...
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    CLINICAL AND TRANSLATIONAL MEDICINE
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    The Human Melanoma Proteome Atlas-Complementing the melanoma transcriptome
    Betancourt, LH;Gil, J;Sanchez, A;Doma, V;Kuras, M;Murillo, JR;Velasquez, E;Çakir, U;Kim, Y;Sugihara, Y;Parada, IP;Szeitz, B;Appelqvist, R;Wieslander, E;Welinder, C;de Almeida, NP;Woldmar, N;Marko-Varga, M;Eriksson, J;Pawlowski, K;Baldetorp, B;Ingvar, C;Olsson, H;Lundgren, L;Lindberg, H;Oskolas, H;Lee, B;Berge, E;Sjögren, M;Eriksson, C;Kim, D;Kwon, HJ;Knudsen, B;Rezeli, M;Malm, J;Hong, RY;Horvath, P;Szász, AM;Tímár, J;Kárpáti, S;Horvatovich, P;Miliotis, T;Nishimura, T;Kato, H;Steinfelder, ...
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    CLINICAL AND TRANSLATIONAL MEDICINE
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