Semmelweis Publications
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    • Bioinformatika Tanszék - Publications used to calculate H-index (2021-2026)

    Number of publications: 33
    1.
    Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
    Lánczky, A;Gyorffy, B
    D1
    JOURNAL OF MEDICAL INTERNET RESEARCH
    2021.
    DOI:10.2196/27633 (Copy DOI)
    Semmelweis University authors: Lánczky, András, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    2.
    Pancancer survival analysis of cancer hallmark genes
    Nagy, A;Munkácsy, G;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2021.
    DOI:10.1038/s41598-021-84787-5 (Copy DOI)
    Semmelweis University authors: Nagy, Ádám, Munkácsy, Gyöngyi, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    3.
    TNMplot.com: A Web Tool for the Comparison of Gene Expression in Normal, Tumor and Metastatic Tissues
    Bartha, A;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2021.
    DOI:10.3390/ijms22052622 (Copy DOI)
    4.
    Survival analysis across the entire transcriptome identifies biomarkers with the highest prognostic power in breast cancer
    Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2021.
    DOI:10.1016/j.csbj.2021.07.014 (Copy DOI)
    5.
    Integrated analysis of public datasets for the discovery and validation of survival-associated genes in solid tumors
    Gyorffy, B
    D1
    INNOVATION
    2024.
    DOI:10.1016/j.xinn.2024.100625 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    6.
    Discovery and ranking of the most robust prognostic biomarkers in serous ovarian cancer
    Gyorffy, B
    D1
    GEROSCIENCE
    2023.
    DOI:10.1007/s11357-023-00742-4 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    7.
    Transcriptome-level discovery of survival-associated biomarkers and therapy targets in non-small-cell lung cancer
    Gyorffy, B
    D1
    BRITISH JOURNAL OF PHARMACOLOGY
    2024.
    DOI:10.1111/bph.16257 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    8.
    Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis
    Menyhárt, O;Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2021.
    DOI:10.1016/j.csbj.2021.01.009 (Copy DOI)
    9.
    Spatial predictors of immunotherapy response in triple-negative breast cancer
    Wang, XQ;Danenberg, E;Huang, CS;Egle, D;Callari, M;Bermejo, B;Dugo, M;Zamagni, C;Thill, M;Anton, A;Zambelli, S;Russo, S;Ciruelos, EM;Greil, R;Györffy, B;Semiglazov, V;Colleoni, M;Kelly, CM;Mariani, G;Del Mastro, L;Biasi, O;Seitz, RS;Valagussa, P;Viale, G;Gianni, L;Bianchini, G;Ali, HR
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-06498-3 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    10.
    The evolution of lung cancer and impact of subclonal selection in TRACERx
    Frankell, AM;Dietzen, M;Al Bakir, M;Lim, EL;Karasaki, T;Ward, S;Veeriah, S;Colliver, E;Huebner, A;Bunkum, A;Hill, MS;Grigoriadis, K;Moore, DA;Black, JRM;Liu, WK;Thol, K;Pich, O;Watkins, TBK;Naceur-Lombardelli, C;Cook, DE;Salgado, R;Wilson, GA;Bailey, C;Angelova, M;Bentham, R;Martínez-Ruiz, C;Abbosh, C;Nicholson, AG;Le Quesne, J;Biswas, D;Rosenthal, R;Puttick, C;Hessey, S;Lee, C;Prymas, P;Toncheva, A;Smith, J;Xing, W;Nicod, J;Price, G;Kerr, KM;Naidu, B;Middleton, G;Blyth, KG;Fennell, DA;Forster,...
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-05783-5 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    11.
    Autophagy and cancer drug resistance in dialogue: Pre-clinical and clinical evidence
    Qin, Y;Ashrafizadeh, M;Mongiardini, V;Grimaldi, B;Crea, F;Rietdorf, K;Gyorffy, B;Klionsky, DJ;Ren, J;Zhang, W;Zhang, XB
    D1
    CANCER LETTERS
    2023.
    DOI:10.1016/j.canlet.2023.216307 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    12.
    The evolution of non-small cell lung cancer metastases in TRACERx
    Al Bakir, M;Huebner, A;Martínez-Ruiz, C;Grigoriadis, K;Watkins, TBK;Pich, O;Moore, DA;Veeriah, S;Ward, S;Laycock, J;Johnson, D;Rowan, A;Razaq, M;Akther, M;Naceur-Lombardelli, C;Prymas, P;Toncheva, A;Hessey, S;Dietzen, M;Colliver, E;Frankell, AM;Bunkum, A;Lim, EL;Karasaki, T;Abbosh, C;Hiley, CT;Hill, MS;Cook, DE;Wilson, GA;Salgado, R;Nye, E;Stone, RK;Fennell, DA;Price, G;Kerr, KM;Naidu, B;Middleton, G;Summers, Y;Lindsay, CR;Blackhall, FH;Cave, J;Blyth, KG;Nair, A;Ahmed, A;Taylor, MN;Procter, AJ;...
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-05729-x (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    13.
    DNA methylation-based diagnostic, prognostic, and predictive biomarkers in colorectal cancer
    Müller, D;Gyorffy, B
    D1
    BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
    2022.
    DOI:10.1016/j.bbcan.2022.188722 (Copy DOI)
    Semmelweis University authors: Müller, Dalma, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    14.
    MultipleTesting.com: A tool for life science researchers for multiple hypothesis testing correction
    Menyhart, O;Weltz, B;Gyorffy, B
    Q1
    PLOS ONE
    2021.
    DOI:10.1371/journal.pone.0245824 (Copy DOI)
    15.
    Microenvironmental ammonia enhances T cell exhaustion in colorectal cancer
    Bell, HN;Huber, AK;Singhal, R;Korimerla, N;Rebernick, RJ;Kumar, R;El-derany, MO;Sajjakulnukit, P;Das, NK;Kerk, SA;Solanki, S;James, JG;Kim, D;Zhang, L;Chen, BD;Mehra, R;Frankel, TL;Gyorffy, B;Fearon, ER;di Magliano, MP;Gonzalez, FJ;Banerjee, R;Wahl, DR;Lyssiotis, CA;Green, M;Shah, YM
    D1
    CELL METABOLISM
    2023.
    DOI:10.1016/j.cmet.2022.11.013 (Copy DOI)
    16.
    Different mutations in SARS-CoV-2 associate with severe and mild outcome
    Nagy, A;Pongor, S;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
    2021.
    DOI:10.1016/j.ijantimicag.2020.106272 (Copy DOI)
    Semmelweis University authors: Nagy, Ádám, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    17.
    Predictive biomarkers of immunotherapy response with pharmacological applications in solid tumors
    Kovács, SA;Fekete, JT;Gyorffy, B
    D1
    ACTA PHARMACOLOGICA SINICA
    2023.
    DOI:10.1038/s41401-023-01079-6 (Copy DOI)
    18.
    muTarget: A platform linking gene expression changes and mutation status in solid tumors
    Nagy, A;Gyorffy, B
    Q1
    INTERNATIONAL JOURNAL OF CANCER
    2021.
    DOI:10.1002/ijc.33283 (Copy DOI)
    19.
    Transient loss of Polycomb components induces an epigenetic cancer fate
    Parreno, V;Loubiere, V;Schuettengruber, B;Fritsch, L;Rawal, CC;Erokhin, M;Gyorffy, B;Normanno, D;Di Stefano, M;Moreaux, J;Butova, NL;Chiolo, I;Chetverina, D;Martinez, AM;Cavalli, G
    D1
    NATURE
    2024.
    DOI:10.1038/s41586-024-07328-w (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    20.
    Body composition and lung cancer-associated cachexia in TRACERx
    Al-Sawaf, O;Weiss, J;Skrzypski, M;Lam, JM;Karasaki, T;Zambrana, F;Kidd, AC;Frankell, AM;Watkins, TBK;Martínez-Ruiz, C;Puttick, C;Black, JRM;Huebner, A;Al Bakir, M;Sokac, M;Collins, S;Veeriah, S;Magno, N;Naceur-Lombardelli, C;Prymas, P;Toncheva, A;Ward, S;Jayanth, N;Salgado, R;Bridge, CP;Christiani, DC;Mak, RH;Bay, C;Rosenthal, M;Sattar, N;Welsh, P;Liu, Y;Perrimon, N;Popuri, K;Beg, MF;McGranahan, N;Hackshaw, A;Breen, DM;O'Rahilly, S;Birkbak, NJ;Aerts, HJWL;Jamal-Hanjani, M;Swanton, C;Lester, JF;...
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02232-8 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    21.
    ELM-the Eukaryotic Linear Motif resource-2024 update
    Kumar, M;Michael, S;Alvarado-Valverde, J;Zeke, A;Lazar, T;Glavina, J;Nagy-Kanta, E;Mac Donagh, J;Kalman, ZE;Pascarelli, S;Palopoli, N;Dobson, L;Suarez, CF;Van Roey, K;Krystkowiak, I;Griffin, JE;Nagpal, A;Bhardwaj, R;Diella, F;Mészáros, B;Dean, K;Davey, NE;Pancsa, R;Chemes, LB;Gibson, TJ
    D1
    NUCLEIC ACIDS RESEARCH
    2024.
    DOI:10.1093/nar/gkad1058 (Copy DOI)
    Semmelweis University authors: Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    22.
    Evolutionary characterization of lung adenocarcinoma morphology in TRACERx
    Karasaki, T;Moore, DA;Veeriah, S;Naceur-Lombardelli, C;Toncheva, A;Magno, N;Ward, S;Al Bakir, M;Watkins, TBK;Grigoriadis, K;Huebner, A;Hill, MS;Frankell, AM;Abbosh, C;Puttick, C;Zhai, HR;Gimeno-Valiente, F;Saghafinia, S;Kanu, N;Dietzen, M;Pich, O;Lim, EL;Martínez-Ruiz, C;Black, JRM;Biswas, D;Campbell, BB;Lee, C;Colliver, E;Enfield, KSS;Hessey, S;Hiley, CT;Zaccaria, S;Litchfield, K;Birkbak, NJ;Cadieux, EL;Demeulemeester, J;Van Loo, P;Adusumilli, PS;Tan, KS;Cheema, W;Sanchez-Vega, F;Jones, DR;Rek...
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02230-w (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    23.
    Liquid biopsy epigenomic profiling for cancer subtyping
    Baca, SC;Seo, JH;Davidsohn, MP;Fortunato, B;Semaan, K;Sotudian, S;Lakshminarayanan, G;Diossy, M;Qiu, XT;El Zarif, T;Savignano, H;Canniff, J;Madueke, I;Saliby, RM;Zhang, ZW;Li, R;Jiang, YJ;Taing, L;Awad, M;Chau, CH;Decaprio, JA;Figg, WD;Greten, TF;Hata, AN;Hodi, FS;Hughes, ME;Ligon, KL;Lin, NY;Ng, K;Oser, MG;Meador, C;Parsons, HA;Pomerantz, MM;Rajan, A;Ritz, J;Thakuria, M;Tolaney, SM;Wen, PY;Long, HY;Berchuck, JE;Szallasi, Z;Choueiri, TK;Freedman, ML
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02605-z (Copy DOI)
    24.
    Molecular stratifications, biomarker candidates and new therapeutic options in current medulloblastoma treatment approaches
    Menyhárt, O;Gyorffy, B
    Q1
    CANCER AND METASTASIS REVIEWS
    2020.
    DOI:10.1007/s10555-020-09854-1 (Copy DOI)
    25.
    Predictive biomarkers of platinum and taxane resistance using the transcriptomic data of 1816 ovarian cancer patients
    Fekete, JT;Osz, A;Pete, I;Nagy, GR;Vereczkey, I;Gyorffy, B
    D1
    GYNECOLOGIC ONCOLOGY
    2020.
    DOI:10.1016/j.ygyno.2020.01.006 (Copy DOI)
    26.
    MetaAnalysisOnline.com: Web-Based Tool for the Rapid Meta-Analysis of Clinical and Epidemiological Studies
    Fekete, JT;Gyorffy, B
    D1
    JOURNAL OF MEDICAL INTERNET RESEARCH
    2025.
    DOI:10.2196/64016 (Copy DOI)
    Semmelweis University authors: Fekete, János Tibor, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    27.
    Glucocorticoid receptor triggers a reversible drug-tolerant dormancy state with acquired therapeutic vulnerabilities in lung cancer
    Prekovic, S;Schuurman, K;Mayayo-Peralta, I;Manjón, AG;Buijs, M;Yavuz, S;Wellenstein, MD;Barrera, A;Monkhorst, K;Huber, A;Morris, B;Lieftink, C;Chalkiadakis, T;Alkan, F;Silva, J;Gyorffy, B;Hoekman, L;van den Broek, B;Teunissen, H;Debets, DO;Severson, T;Jonkers, J;Reddy, T;de Visser, KE;Faller, W;Beijersbergen, R;Altelaar, M;de Wit, E;Medema, R;Zwart, W
    D1
    NATURE COMMUNICATIONS
    2021.
    DOI:10.1038/s41467-021-24537-3 (Copy DOI)
    28.
    Inflammation and Colorectal Cancer: A Meta-Analysis of the Prognostic Significance of the Systemic Immune-Inflammation Index (SII) and the Systemic Inflammation Response Index (SIRI)
    Menyhart, O;Fekete, JT;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms25158441 (Copy DOI)
    29.
    Survival analysis in breast cancer using proteomic data from four independent datasets
    Osz, A;Lánczky, A;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2021.
    DOI:10.1038/s41598-021-96340-5 (Copy DOI)
    30.
    Type I Interferon Regulates a Coordinated Gene Network to Enhance Cytotoxic T Cell-Mediated Tumor Killing
    Fan, JB;Miyauchi, S;Xu, HZ;Liu, D;Kim, LJY;Burkart, C;Cheng, H;Arimoto, K;Yan, M;Zhou, Y;Gyorffy, B;Knobeloch, KP;Rich, JN;Cang, H;Fu, XD;Zhang, DE
    D1
    CANCER DISCOVERY
    2020.
    DOI:10.1158/2159-8290.CD-19-0608 (Copy DOI)
    31.
    Oncogene-mediated metabolic gene signature predicts breast cancer outcome
    Aslan, M;Hsu, EC;Garcia-Marques, FJ;Bermudez, A;Liu, SQ;Shen, M;West, M;Zhang, CA;Rice, MA;Brooks, JD;West, R;Pitteri, SJ;Gyorffy, B;Stoyanova, T
    D1
    NPJ BREAST CANCER
    2021.
    DOI:10.1038/s41523-021-00341-6 (Copy DOI)
    32.
    Transcriptomic datasets of cancer patients treated with immune-checkpoint inhibitors: a systematic review
    Kovács, SA;Gyorffy, B
    D1
    JOURNAL OF TRANSLATIONAL MEDICINE
    2022.
    DOI:10.1186/s12967-022-03409-4 (Copy DOI)
    Semmelweis University authors: Kovács, Szonja Anna, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    33.
    Research funding: past performance is a stronger predictor of future scientific output than reviewer scores
    Gyorffy, B;Herman, P;Szabó, I
    D1
    JOURNAL OF INFORMETRICS
    2020.
    DOI:10.1016/j.joi.2020.101050 (Copy DOI)

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    Release: 2026_1
    Department data last refreshed at: 12.01.2026
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