Semmelweis Publications
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    • Bioinformatika Tanszék - Publications (article, review) in SJR Q1 and Q2 jorunals (2020-2024)

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    Number of publications: 186
    1.
    Integrated analysis of public datasets for the discovery and validation of survival-associated genes in solid tumors
    Gyorffy, B
    D1
    INNOVATION
    2024.
    DOI:10.1016/j.xinn.2024.100625 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    2.
    Transcriptome-level discovery of survival-associated biomarkers and therapy targets in non-small-cell lung cancer
    Gyorffy, B
    D1
    BRITISH JOURNAL OF PHARMACOLOGY
    2024.
    DOI:10.1111/bph.16257 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    3.
    Web-Based Survival Analysis Tool Tailored for Medical Research (KMplot): Development and Implementation
    Lánczky, A;Gyorffy, B
    D1
    JOURNAL OF MEDICAL INTERNET RESEARCH
    2021.
    DOI:10.2196/27633 (Copy DOI)
    Semmelweis University authors: Lánczky, András, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    4.
    Discovery and ranking of the most robust prognostic biomarkers in serous ovarian cancer
    Gyorffy, B
    D1
    GEROSCIENCE
    2023.
    DOI:10.1007/s11357-023-00742-4 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    5.
    Lung adenocarcinoma promotion by air pollutants.
    Hill, William; Lim, Emilia L; Weeden, Clare E; Lee, Claudia; Augustine, Marcellus; Chen, Kezhong; Kuan, Feng-Che; Marongiu, Fabio; Evans, Edward J; Moore, David A; Rodrigues, Felipe S; Pich, Oriol; Bakker, Bjorn; Cha, Hongui; Myers, Renelle; van Maldegem, Febe; Boumelha, Jesse; Veeriah, Selvaraju; Rowan, Andrew; Naceur-Lombardelli, Cristina; Karasaki, Takahiro; Sivakumar, Monica; De, Swapnanil; Caswell, Deborah R; Nagano, Ai; Black, James R M; Martínez-Ruiz, Carlos; Ryu, Min Hyung; Huff, Ryan D...
    D1
    NATURE 0028-0836 1476-4687
    2023.
    DOI:10.1038/s41586-023-05874-3 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    6.
    TNMplot.com: A Web Tool for the Comparison of Gene Expression in Normal, Tumor and Metastatic Tissues
    Bartha, A;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2021.
    DOI:10.3390/ijms22052622 (Copy DOI)
    7.
    Survival analysis across the entire transcriptome identifies biomarkers with the highest prognostic power in breast cancer
    Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2021.
    DOI:10.1016/j.csbj.2021.07.014 (Copy DOI)
    8.
    Pancancer survival analysis of cancer hallmark genes
    Nagy, A;Munkácsy, G;Gyorffy, B
    D1
    SCIENTIFIC REPORTS
    2021.
    DOI:10.1038/s41598-021-84787-5 (Copy DOI)
    Semmelweis University authors: Nagy, Ádám, Munkácsy, Gyöngyi, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    9.
    Autophagy and cancer drug resistance in dialogue: Pre-clinical and clinical evidence
    Qin, Y;Ashrafizadeh, M;Mongiardini, V;Grimaldi, B;Crea, F;Rietdorf, K;Gyorffy, B;Klionsky, DJ;Ren, J;Zhang, W;Zhang, XB
    D1
    CANCER LETTERS
    2023.
    DOI:10.1016/j.canlet.2023.216307 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék, Department of Pediatrics,
    10.
    Tracking early lung cancer metastatic dissemination in TRACERx using ctDNA.
    Abbosh, Christopher; Frankell, Alexander M; Harrison, Thomas; Kisistok, Judit; Garnett, Aaron; Johnson, Laura; Veeriah, Selvaraju; Moreau, Mike; Chesh, Adrian; Chaunzwa, Tafadzwa L; Weiss, Jakob; Schroeder, Morgan R; Ward, Sophia; Grigoriadis, Kristiana; Shahpurwalla, Aamir; Litchfield, Kevin; Puttick, Clare; Biswas, Dhruva; Karasaki, Takahiro; Black, James R M; Martínez-Ruiz, Carlos; Bakir, Maise Al; Pich, Oriol; Watkins, Thomas B K; Lim, Emilia L; Huebner, Ariana; Moore, David A; Godin-Heyman...
    D1
    NATURE 0028-0836 1476-4687
    2023.
    DOI:10.1038/s41586-023-05776-4 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    11.
    Predictive biomarkers of immunotherapy response with pharmacological applications in solid tumors
    Kovács, SA;Fekete, JT;Gyorffy, B
    D1
    ACTA PHARMACOLOGICA SINICA
    2023.
    DOI:10.1038/s41401-023-01079-6 (Copy DOI)
    12.
    Spatial predictors of immunotherapy response in triple-negative breast cancer
    Wang, XQ;Danenberg, E;Huang, CS;Egle, D;Callari, M;Bermejo, B;Dugo, M;Zamagni, C;Thill, M;Anton, A;Zambelli, S;Russo, S;Ciruelos, EM;Greil, R;Györffy, B;Semiglazov, V;Colleoni, M;Kelly, CM;Mariani, G;Del Mastro, L;Biasi, O;Seitz, RS;Valagussa, P;Viale, G;Gianni, L;Bianchini, G;Ali, HR
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-06498-3 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    13.
    Antibodies against endogenous retroviruses promote lung cancer immunotherapy.
    Ng, Kevin W; Boumelha, Jesse; Enfield, Katey S S; Almagro, Jorge; Cha, Hongui; Pich, Oriol; Karasaki, Takahiro; Moore, David A; Salgado, Roberto; Sivakumar, Monica; Young, George; Molina-Arcas, Miriam; de Carné Trécesson, Sophie; Anastasiou, Panayiotis; Fendler, Annika; Au, Lewis; Shepherd, Scott T C; Martínez-Ruiz, Carlos; Puttick, Clare; Black, James R M; Watkins, Thomas B K; Kim, Hyemin; Shim, Seohee; Faulkner, Nikhil; Attig, Jan; Veeriah, Selvaraju; Magno, Neil; Ward, Sophia; Frankell, Al...
    D1
    NATURE 0028-0836 1476-4687
    2023.
    DOI:10.1038/s41586-023-05771-9 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    14.
    Transient loss of Polycomb components induces an epigenetic cancer fate
    Parreno, V;Loubiere, V;Schuettengruber, B;Fritsch, L;Rawal, CC;Erokhin, M;Gyorffy, B;Normanno, D;Di Stefano, M;Moreaux, J;Butova, NL;Chiolo, I;Chetverina, D;Martinez, AM;Cavalli, G
    D1
    NATURE
    2024.
    DOI:10.1038/s41586-024-07328-w (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    15.
    DisProt in 2024: improving function annotation of intrinsically disordered proteins
    Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Quaglia, Federica; Bouharoua, Adel; Tosatto, Silvio C. E.; Piovesan, Damiano; , ; Vasileios, Sagris; Vasilis, J Promponas; Anastasia, Chasapi; Erzsébet, Fichó; Galo, E Balatti; Gustavo, Parisi; Martín, González Buitrón; Gabor, Erdos; Matyas, Pajkos; Zsuzsanna, Dosztányi; Laszlo, Dobson; Alessio, Del Conte; Damiano, Clementel; Edoardo, Salladini; Emanuela, Leonardi; Fatemeh, Kordevani; Hamidreza, Ghafouri; Luiggi, G Tenorio Ku; Alexander, ...
    D1
    NUCLEIC ACIDS RESEARCH 0305-1048 1362-4962
    2024.
    DOI:10.1093/nar/gkad928 (Copy DOI)
    Semmelweis University authors: Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    16.
    The evolution of lung cancer and impact of subclonal selection in TRACERx
    Frankell, AM;Dietzen, M;Al Bakir, M;Lim, EL;Karasaki, T;Ward, S;Veeriah, S;Colliver, E;Huebner, A;Bunkum, A;Hill, MS;Grigoriadis, K;Moore, DA;Black, JRM;Liu, WK;Thol, K;Pich, O;Watkins, TBK;Naceur-Lombardelli, C;Cook, DE;Salgado, R;Wilson, GA;Bailey, C;Angelova, M;Bentham, R;Martínez-Ruiz, C;Abbosh, C;Nicholson, AG;Le Quesne, J;Biswas, D;Rosenthal, R;Puttick, C;Hessey, S;Lee, C;Prymas, P;Toncheva, A;Smith, J;Xing, W;Nicod, J;Price, G;Kerr, KM;Naidu, B;Middleton, G;Blyth, KG;Fennell, DA;Forster,...
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-05783-5 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    17.
    ELM-the Eukaryotic Linear Motif resource-2024 update
    Kumar, M;Michael, S;Alvarado-Valverde, J;Zeke, A;Lazar, T;Glavina, J;Nagy-Kanta, E;Mac Donagh, J;Kalman, ZE;Pascarelli, S;Palopoli, N;Dobson, L;Suarez, CF;Van Roey, K;Krystkowiak, I;Griffin, JE;Nagpal, A;Bhardwaj, R;Diella, F;Mészáros, B;Dean, K;Davey, NE;Pancsa, R;Chemes, LB;Gibson, TJ
    D1
    NUCLEIC ACIDS RESEARCH
    2024.
    DOI:10.1093/nar/gkad1058 (Copy DOI)
    Semmelweis University authors: Dobson, László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    18.
    Microenvironmental ammonia enhances T cell exhaustion in colorectal cancer
    Bell, HN;Huber, AK;Singhal, R;Korimerla, N;Rebernick, RJ;Kumar, R;El-derany, MO;Sajjakulnukit, P;Das, NK;Kerk, SA;Solanki, S;James, JG;Kim, D;Zhang, L;Chen, BD;Mehra, R;Frankel, TL;Gyorffy, B;Fearon, ER;di Magliano, MP;Gonzalez, FJ;Banerjee, R;Wahl, DR;Lyssiotis, CA;Green, M;Shah, YM
    D1
    CELL METABOLISM
    2023.
    DOI:10.1016/j.cmet.2022.11.013 (Copy DOI)
    19.
    The evolution of non-small cell lung cancer metastases in TRACERx
    Al Bakir, M;Huebner, A;Martínez-Ruiz, C;Grigoriadis, K;Watkins, TBK;Pich, O;Moore, DA;Veeriah, S;Ward, S;Laycock, J;Johnson, D;Rowan, A;Razaq, M;Akther, M;Naceur-Lombardelli, C;Prymas, P;Toncheva, A;Hessey, S;Dietzen, M;Colliver, E;Frankell, AM;Bunkum, A;Lim, EL;Karasaki, T;Abbosh, C;Hiley, CT;Hill, MS;Cook, DE;Wilson, GA;Salgado, R;Nye, E;Stone, RK;Fennell, DA;Price, G;Kerr, KM;Naidu, B;Middleton, G;Summers, Y;Lindsay, CR;Blackhall, FH;Cave, J;Blyth, KG;Nair, A;Ahmed, A;Taylor, MN;Procter, AJ;...
    D1
    NATURE
    2023.
    DOI:10.1038/s41586-023-05729-x (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    20.
    Genomic-transcriptomic evolution in lung cancer and metastasis.
    Martínez-Ruiz, Carlos; Black, James R M; Puttick, Clare; Hill, Mark S; Demeulemeester, Jonas; Larose Cadieux, Elizabeth; Thol, Kerstin; Jones, Thomas P; Veeriah, Selvaraju; Naceur-Lombardelli, Cristina; Toncheva, Antonia; Prymas, Paulina; Rowan, Andrew; Ward, Sophia; Cubitt, Laura; Athanasopoulou, Foteini; Pich, Oriol; Karasaki, Takahiro; Moore, David A; Salgado, Roberto; Colliver, Emma; Castignani, Carla; Dietzen, Michelle; Huebner, Ariana; Al Bakir, Maise; Tanić, Miljana; Watkins, Thomas B K...
    D1
    NATURE 0028-0836 1476-4687
    2023.
    DOI:10.1038/s41586-023-05706-4 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    21.
    Different mutations in SARS-CoV-2 associate with severe and mild outcome
    Nagy, A;Pongor, S;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
    2021.
    DOI:10.1016/j.ijantimicag.2020.106272 (Copy DOI)
    Semmelweis University authors: Nagy, Ádám, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    22.
    Liquid biopsy epigenomic profiling for cancer subtyping
    Baca, SC;Seo, JH;Davidsohn, MP;Fortunato, B;Semaan, K;Sotudian, S;Lakshminarayanan, G;Diossy, M;Qiu, XT;El Zarif, T;Savignano, H;Canniff, J;Madueke, I;Saliby, RM;Zhang, ZW;Li, R;Jiang, YJ;Taing, L;Awad, M;Chau, CH;Decaprio, JA;Figg, WD;Greten, TF;Hata, AN;Hodi, FS;Hughes, ME;Ligon, KL;Lin, NY;Ng, K;Oser, MG;Meador, C;Parsons, HA;Pomerantz, MM;Rajan, A;Ritz, J;Thakuria, M;Tolaney, SM;Wen, PY;Long, HY;Berchuck, JE;Szallasi, Z;Choueiri, TK;Freedman, ML
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02605-z (Copy DOI)
    23.
    Prognostic significance of a signature based on senescence-related genes in colorectal cancer
    Ungvari, Z;Ungvari, A;Bianchini, G;Gyorffy, B
    D1
    GEROSCIENCE
    2024.
    DOI:10.1007/s11357-024-01164-6 (Copy DOI)
    24.
    Body composition and lung cancer-associated cachexia in TRACERx
    Al-Sawaf, O;Weiss, J;Skrzypski, M;Lam, JM;Karasaki, T;Zambrana, F;Kidd, AC;Frankell, AM;Watkins, TBK;Martínez-Ruiz, C;Puttick, C;Black, JRM;Huebner, A;Al Bakir, M;Sokac, M;Collins, S;Veeriah, S;Magno, N;Naceur-Lombardelli, C;Prymas, P;Toncheva, A;Ward, S;Jayanth, N;Salgado, R;Bridge, CP;Christiani, DC;Mak, RH;Bay, C;Rosenthal, M;Sattar, N;Welsh, P;Liu, Y;Perrimon, N;Popuri, K;Beg, MF;McGranahan, N;Hackshaw, A;Breen, DM;O'Rahilly, S;Birkbak, NJ;Aerts, HJWL;Jamal-Hanjani, M;Swanton, C;Lester, JF;...
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02232-8 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    25.
    Evolutionary characterization of lung adenocarcinoma morphology in TRACERx
    Karasaki, T;Moore, DA;Veeriah, S;Naceur-Lombardelli, C;Toncheva, A;Magno, N;Ward, S;Al Bakir, M;Watkins, TBK;Grigoriadis, K;Huebner, A;Hill, MS;Frankell, AM;Abbosh, C;Puttick, C;Zhai, HR;Gimeno-Valiente, F;Saghafinia, S;Kanu, N;Dietzen, M;Pich, O;Lim, EL;Martínez-Ruiz, C;Black, JRM;Biswas, D;Campbell, BB;Lee, C;Colliver, E;Enfield, KSS;Hessey, S;Hiley, CT;Zaccaria, S;Litchfield, K;Birkbak, NJ;Cadieux, EL;Demeulemeester, J;Van Loo, P;Adusumilli, PS;Tan, KS;Cheema, W;Sanchez-Vega, F;Jones, DR;Rek...
    D1
    NATURE MEDICINE
    2023.
    DOI:10.1038/s41591-023-02230-w (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    26.
    Long-term Multimodal Recording Reveals Epigenetic Adaptation Routes in Dormant Breast Cancer Cells
    Rosano, D;Sofyali, E;Dhiman, H;Ghirardi, C;Ivanoiu, D;Heide, T;Vingiani, A;Bertolotti, A;Pruneri, G;Canale, E;Dewhurst, HF;Saha, D;Slaven, N;Barozzi, I;Li, T;Zemlyanskiy, G;Phillips, H;James, C;Gyorffy, B;Lynn, C;Cresswell, GD;Rehman, F;Noberini, R;Bonaldi, T;Sottoriva, A;Magnani, L
    D1
    CANCER DISCOVERY
    2024.
    DOI:10.1158/2159-8290.CD-23-1161 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    27.
    The m6A writer RBM15 drives the growth of triple-negative breast cancer cells through the stimulation of serine and glycine metabolism
    Park, SH;Ju, JS;Woo, H;Yun, HJ;Lee, SB;Kim, SH;Gyorffy, B;Kim, EJ;Kim, H;Han, HD;Eyun, SI;Lee, JH;Park, YY
    D1
    EXPERIMENTAL AND MOLECULAR MEDICINE
    2024.
    DOI:10.1038/s12276-024-01235-w (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    28.
    The artificial intelligence-based model ANORAK improves histopathological grading of lung adenocarcinoma
    Pan, XX;Abduljabbar, K;Coelho-Lima, J;Grapa, AI;Zhang, HY;Cheung, AHK;Baena, J;Karasaki, T;Wilson, CR;Sereno, M;Veeriah, S;Aitken, SJ;Hackshaw, A;Nicholson, AG;Jamal-Hanjani, M;Swanton, C;Jamal-Hanjani, M;Zhang, H;AbdulJabbar, K;Pan, X;Yuan, Y;Hackshaw, A;Le Quesne, J;Veeriah, S;Karasaki, T;Janes, SM;Hacker, AM;Sharp, A;Smith, S;Dhanda, HK;Chan, KTY;Pilotti, C;Leslie, R;Grapa, AI;Chuter, D;Mackenzie, M;Chee, S;Alzetani, A;Lim, E;De Sousa, P;Jordan, S;Rice, A;Raubenheimer, H;Bhayani, H;Ambrose, L...
    D1
    NATURE CANCER
    2024.
    DOI:10.1038/s43018-023-00694-w (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    29.
    Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis
    Menyhárt, O;Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2021.
    DOI:10.1016/j.csbj.2021.01.009 (Copy DOI)
    30.
    Analysis of a large cohort of pancreatic cancer transcriptomic profiles to reveal the strongest prognostic factors
    Posta, M;Gyorffy, B
    D1
    CTS-CLINICAL AND TRANSLATIONAL SCIENCE
    2023.
    DOI:10.1111/cts.13563 (Copy DOI)
    31.
    Mediator kinase inhibition reverses castration resistance of advanced cancer
    Li, J;Hilimire, TA;Liu, YY;Wang, LL;Liang, JX;Gyorffy, B;Sikirzhytski, V;Ji, H;Zhang, L;Cheng, C;Ding, XK;Kerr, KR;Dowling, CE;Chumanevich, AA;Mack, ZT;Schools, GP;Lim, CU;Ellis, L;Zi, XL;Porter, DC;Broude, EV;McInnes, C;Wilding, G;Lilly, MB;Roninson, IB;Chen, MQ
    D1
    JOURNAL OF CLINICAL INVESTIGATION
    2024.
    DOI:10.1172/JCI176709 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    32.
    ALK peptide vaccination restores the immunogenicity of ALK-rearranged non-small cell lung cancer
    Mota, I;Patrucco, E;Mastini, C;Mahadevan, NR;Thai, TC;Bergaggio, E;Cheong, TC;Leonardi, G;Karaca-Atabay, E;Campisi, M;Poggio, T;Menotti, M;Ambrogio, C;Longo, DL;Klaeger, S;Keshishian, H;Sztupinszki, ZM;Szallasi, Z;Keskin, DB;Duke-Cohan, JS;Reinhold, B;Carr, SA;Wu, CJ;Moynihan, KD;Irvine, DJ;Barbie, DA;Reinherz, EL;Voena, C;Awad, MM;Blasco, RB;Chiarle, R
    D1
    NATURE CANCER
    2023.
    DOI:10.1038/s43018-023-00591-2 (Copy DOI)
    Semmelweis University authors: Szállási, Zoltán,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    33.
    Predictive biomarkers of platinum and taxane resistance using the transcriptomic data of 1816 ovarian cancer patients
    Fekete, JT;Osz, A;Pete, I;Nagy, GR;Vereczkey, I;Gyorffy, B
    D1
    GYNECOLOGIC ONCOLOGY
    2020.
    DOI:10.1016/j.ygyno.2020.01.006 (Copy DOI)
    34.
    muTarget: A platform linking gene expression changes and mutation status in solid tumors
    Nagy, A;Gyorffy, B
    Q1
    INTERNATIONAL JOURNAL OF CANCER
    2021.
    DOI:10.1002/ijc.33283 (Copy DOI)
    35.
    DNA methylation-based diagnostic, prognostic, and predictive biomarkers in colorectal cancer
    Müller, D;Gyorffy, B
    D1
    BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON CANCER
    2022.
    DOI:10.1016/j.bbcan.2022.188722 (Copy DOI)
    Semmelweis University authors: Müller, Dalma, Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    36.
    MultipleTesting.com: A tool for life science researchers for multiple hypothesis testing correction
    Menyhart, O;Weltz, B;Gyorffy, B
    Q1
    PLOS ONE
    2021.
    DOI:10.1371/journal.pone.0245824 (Copy DOI)
    37.
    Inflammation and Colorectal Cancer: A Meta-Analysis of the Prognostic Significance of the Systemic Immune-Inflammation Index (SII) and the Systemic Inflammation Response Index (SIRI)
    Menyhart, O;Fekete, JT;Gyorffy, B
    D1
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms25158441 (Copy DOI)
    38.
    MHC Hammer reveals genetic and non-genetic HLA disruption in cancer evolution.
    Puttick, Clare; Jones, Thomas P; Leung, Michelle M; Galvez-Cancino, Felipe; Liu, Jiali; Varas-Godoy, Manuel; Rowan, Andrew; Pich, Oriol; Martinez-Ruiz, Carlos; Bentham, Robert; Dijkstra, Krijn K; Black, James R M; Rosenthal, Rachel; Kanu, Nnennaya; Litchfield, Kevin; Salgado, Roberto; Moore, David A; Van Loo, Peter; Jamal-Hanjani, Mariam; Quezada, Sergio A; Swanton, Charles; , ; McGranahan, Nicholas; Cheyne, Heather; Khalil, Mohammed; Richardson, Shirley; Cruickshank, Tracey; Lim, Eric; Aerts, H...
    D1
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    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
    2024.
    DOI:10.3390/ijms25105345 (Copy DOI)
    180.
    Protein Expression in Metastatic Melanoma and the Link to Disease Presentation in a Range of Tumor Phenotypes
    Kim, Y;Gil, J;Pla, I;Sanchez, A;Betancourt, LH;Lee, B;Appelqvist, R;Ingvar, C;Lundgren, L;Olsson, H;Baldetorp, B;Kwon, HJ;Oskolás, H;Rezeli, M;Doma, V;Kárpáti, S;Szasz, AM;Németh, IB;Malm, J;Marko-Varga, G
    Q1
    CANCERS
    2020.
    DOI:10.3390/cancers12030767 (Copy DOI)
    181.
    REST-dependent glioma progression occurs independently of the repression of the long non-coding RNA HAR1A
    Waters, E;Pucci, P;Rahman, R;Yatsyshyna, AP;Porter, H;Hirst, M;Gromnicova, R;Kraev, I;Mongiardini, V;Grimaldi, B;Golding, J;Fillmore, HL;Gyorffy, B;Gangadharannambiar, P;Velanis, CN;Heath, CJ;Crea, F
    Q1
    PLOS ONE
    2024.
    DOI:10.1371/journal.pone.0312237 (Copy DOI)
    Semmelweis University authors: Győrffy, Balázs,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    182.
    A unified platform enabling biomarker ranking and validation for 1562 drugs using transcriptomic data of 1250 cancer cell lines
    Fekete, JT;Gyorffy, B
    D1
    COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL
    2022.
    DOI:10.1016/j.csbj.2022.06.007 (Copy DOI)
    183.
    Extensive proteome and functional genomic profiling of variability between genetically identical human B-lymphoblastoid cells
    Laczik, M;Erdos, E;Ozgyin, L;Hevessy, Z;Csosz, E;Kalló, G;Nagy, T;Barta, E;Póliska, S;Szatmári, I;Bálint, BL
    D1
    SCIENTIFIC DATA
    2022.
    DOI:10.1038/s41597-022-01871-9 (Copy DOI)
    Semmelweis University authors: Bálint, Bálint László,
    Semmelweis University departments: Semmelweis University, Faculty of Medicine, Bioinformatika Tanszék,
    184.
    In-depth proteomic analysis reveals unique subtype-specific signatures in human small-cell lung cancer
    Szeitz, B;Megyesfalvi, Z;Woldmar, N;Valkó, Z;Schwendenwein, A;Bárány, N;Paku, S;László, V;Kiss, H;Bugyik, E;Lang, C;Szász, AM;Pizzatti, L;Bogos, K;Hoda, MA;Hoetzenecker, K;Marko-Varga, G;Horvatovich, P;Döme, B;Schelch, K;Rezeli, M
    D1
    CLINICAL AND TRANSLATIONAL MEDICINE
    2022.
    DOI:10.1002/ctm2.1060 (Copy DOI)
    185.
    PVT1 is a stress-responsive lncRNA that drives ovarian cancer metastasis and chemoresistance
    Tabury, K;Monavarian, M;Listik, E;Shelton, AK;Choi, AS;Quintens, R;Arend, RC;Hempel, N;Miller, CR;Györrfy, B;Mythreye, K
    D1
    LIFE SCIENCE ALLIANCE
    2022.
    DOI:10.26508/lsa.202201370 (Copy DOI)
    186.
    Mitochondrial dysfunction and immune suppression in BRAF V600E-mutated metastatic melanoma
    de Almeida, NP;Jánosi, AJ;Hong, RY;Rajeh, A;Nogueira, F;Szadai, L;Szeitz, B;Parada, IP;Doma, V;Woldmar, N;Guedes, J;Ujfaludi, Z;Bartha, A;Kim, Y;Welinder, C;Baldetorp, B;Kemény, LV;Pahi, Z;Wan, GH;Nguyen, N;Pankotai, T;Gyorffy, B;Pawlowski, K;Horvatovich, P;Szasz, AM;Sanchez, A;Kuras, M;Murillo, JR;Betancourt, L;Domont, GB;Semenov, YR;Yu, KH;Kwon, HJ;Németh, IB;Fenyo, D;Wieslander, E;Marko-Varga, G;Gil, J
    D1
    CLINICAL AND TRANSLATIONAL MEDICINE
    2024.
    DOI:10.1002/ctm2.1773 (Copy DOI)

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